PXD042717

PXD042717 is an original dataset announced via ProteomeXchange.

Title	Comparative proteomic analysis of edible bird’s nest from different origins.
Description	Edible bird’s nest (EBN) mainly made of saliva that secreted by a variety of swiftlets is a kind of precious traditional Chinese medicine. EBNs from different biological and geographical origins exhibit varieties in morphology, material composition, nutritive value and commercial value. Here, we collected four different EBN samples from Huaiji, China (Grass EBN), Nha Trang, Vietnam (Imperial EBN) and East Kalimantan, Indonesia (White EBN and Feather EBN) respectively, and applied label-free quantitative MS-based proteomics technique to identify its protein composition. First, phylogenetic analysis was performed based on cytb gene to identify its biological origin. Second, a total of 37 proteins of EBNs were identified, among which there were six common proteins that detected in all samples and exhibited relatively higher content. Gene ontology analysis revealed the possible function of EBN proteins, and principal component analysis and hierarchical clustering analysis based on 37 proteins were performed to co
HostingRepository	iProX
AnnounceDate	2023-08-07
AnnouncementXML	Submission_2023-10-26_19:05:48.347.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Xianyang Wang
SpeciesList	scientific name: Aerodramus hirundinaceus; NCBI TaxID: 1496111;
ModificationList	No PTMs are included in the dataset
Instrument	Thermo Fisher Scientific instrument model

Revision	Datetime	Status	ChangeLog Entry
0	2023-06-04 21:07:26	ID requested
1	2023-06-04 21:07:36	announced
⏵ 2	2023-10-26 19:05:49	announced	2023-10-27: Update publication information.

Wang X, Hu D, Liao F, Chen S, Meng Y, Dai J, Dong TTX, Lao Z, Yu L, Liang Y, Lai X, Tsim KWK, Li G, Comparative proteomic analysis of edible bird's nest from different origins. Sci Rep, 13(1):15859(2023) [pubmed]

submitter keyword: Edible bird’s nest, Protein identification, Label-free proteomic, Genetic origin, Gene ontology, Principal component analysis, Hierarchical clustering analysis

Geng Li
contact affiliation	Animal Experiment Center, Guangzhou University of Chinese Medicine
contact email	lg@gzucm.edu.cn
lab head
Xianyang Wang
contact affiliation	Animal Experiment Center, Guangzhou University of Chinese Medicine
contact email	20201110936@stu.gzucm.edu.cn
dataset submitter

iProX dataset URI