PXD042664

PXD042664 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	CFdb: A harmonized resource of co-fractionation mass spectrometry data
Description	A total of 411 co-fractionation mass spectrometry (CF-MS) experiments were downloaded from public proteomics repositories such as PRIDE and MassIVE, then re-analyzed with MaxQuant. This repository provides complete MaxQuant outputs from all 411 experiments.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:27:51.195.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michael Skinnider
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116; scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Xenopus laevis (African clawed frog); NCBI TaxID: 8355; scientific name: Caenorhabditis elegans; NCBI TaxID: 6239; scientific name: Dictyostelium discoideum (Slime mold); NCBI TaxID: 44689; scientific name: Triticum aestivum (Wheat); NCBI TaxID: 4565; scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; scientific name: Trypanosoma brucei; NCBI TaxID: 5691; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Zea mays (Maize); NCBI TaxID: 4577; scientific name: Drosophila melanogaster (Fruit fly); NCBI TaxID: 7227;
ModificationList	acetylated residue; monohydroxylated residue
Instrument	LTQ; LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-06-02 07:27:55	ID requested
1	2024-01-26 16:26:10	announced
⏵ 2	2024-10-22 06:27:52	announced	2024-10-22: Updated project metadata.

Publication List

Skinnider MA, Akinlaja MO, Foster LJ, Mapping protein states and interactions across the tree of life with co-fractionation mass spectrometry. Nat Commun, 14(1):8365(2023) [pubmed]
10.1038/s41467-023-44139-5;

Skinnider MA, Akinlaja MO, Foster LJ, Mapping protein states and interactions across the tree of life with co-fractionation mass spectrometry. Nat Commun, 14(1):8365(2023) [pubmed]

10.1038/s41467-023-44139-5;

Keyword List

submitter keyword: CF-MS, protein correlation profiling, protein complexes, co-fractionation mass spectrometry, interactome

submitter keyword: CF-MS, protein correlation profiling, protein complexes, co-fractionation mass spectrometry, interactome

Contact List

Leonard Foster
contact affiliation	Department of Biochemistry and Molecular Biology, University of British Columbia
contact email	foster@msl.ubcc.a
lab head
Michael Skinnider
contact affiliation	University of British Columbia
contact email	michael.skinnider@msl.ubc.ca
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042664
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042664

PRIDE project URI

Repository Record List

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