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PXD042664

PXD042664 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleCFdb: A harmonized resource of co-fractionation mass spectrometry data
DescriptionA total of 411 co-fractionation mass spectrometry (CF-MS) experiments were downloaded from public proteomics repositories such as PRIDE and MassIVE, then re-analyzed with MaxQuant. This repository provides complete MaxQuant outputs from all 411 experiments.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_06:27:51.195.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMichael Skinnider
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116; scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Xenopus laevis (African clawed frog); NCBI TaxID: 8355; scientific name: Caenorhabditis elegans; NCBI TaxID: 6239; scientific name: Dictyostelium discoideum (Slime mold); NCBI TaxID: 44689; scientific name: Triticum aestivum (Wheat); NCBI TaxID: 4565; scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; scientific name: Trypanosoma brucei; NCBI TaxID: 5691; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Zea mays (Maize); NCBI TaxID: 4577; scientific name: Drosophila melanogaster (Fruit fly); NCBI TaxID: 7227;
ModificationListacetylated residue; monohydroxylated residue
InstrumentLTQ; LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-06-02 07:27:55ID requested
12024-01-26 16:26:10announced
22024-10-22 06:27:52announced2024-10-22: Updated project metadata.
Publication List
Skinnider MA, Akinlaja MO, Foster LJ, Mapping protein states and interactions across the tree of life with co-fractionation mass spectrometry. Nat Commun, 14(1):8365(2023) [pubmed]
10.1038/s41467-023-44139-5;
Keyword List
submitter keyword: CF-MS, protein correlation profiling, protein complexes, co-fractionation mass spectrometry, interactome
Contact List
Leonard Foster
contact affiliationDepartment of Biochemistry and Molecular Biology, University of British Columbia
contact emailfoster@msl.ubcc.a
lab head
Michael Skinnider
contact affiliationUniversity of British Columbia
contact emailmichael.skinnider@msl.ubc.ca
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042664
PRIDE project URI
Repository Record List
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