PXD042385

PXD042385 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Trace sample analysis using Data-Dependent Acquisition Without Dynamic Exclusion
Description	In this study, we report the application of turboDDA in improving trace sample analysis. Using different amount of K562 samples, we detected increases in identified protein number of more than 20% compared to all samples analyzed by standard DDA with dynamic exclusion.
HostingRepository	PRIDE
AnnounceDate	2024-01-26
AnnouncementXML	Submission_2024-01-26_10:36:27.344.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ci Wu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-22 01:13:13	ID requested
⏵ 1	2024-01-26 10:36:30	announced

Publication List

10.1021/acs.analchem.3c03357;
Wu C, Lei J, Meng F, Wang X, Wong CJ, Peng J, Lin G, Gingras AC, Ma J, Zhang S, Trace Sample Proteome Quantification by Data-Dependent Acquisition without Dynamic Exclusion. Anal Chem, 95(49):17981-17987(2023) [pubmed]

10.1021/acs.analchem.3c03357;

Wu C, Lei J, Meng F, Wang X, Wong CJ, Peng J, Lin G, Gingras AC, Ma J, Zhang S, Trace Sample Proteome Quantification by Data-Dependent Acquisition without Dynamic Exclusion. Anal Chem, 95(49):17981-17987(2023) [pubmed]

Keyword List

submitter keyword: turboDDA,K562, high PH fractionation, DE-DDA

submitter keyword: turboDDA,K562, high PH fractionation, DE-DDA

Contact List

Shen Zhang
contact affiliation	Clinical Reaseach center for Reproduction and Genetics in Hunan Province, Reproductive and Genetic Hospital of CITIC-XIANGYA, Changsha, Hunan, China
contact email	szhang231@126.com
lab head
Ci Wu
contact affiliation	Research specialist
contact email	wuci1111@126.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042385
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042385

PRIDE project URI

Repository Record List

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