PXD042323
PXD042323 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Akkermansia muciniphila secretome |
| Description | In this study, we attempted to identify a new probiotic effector molecule of A. muciniphila that plays a role in modulating host cells through secretome analysis. We performed proteomic profiling of secretome of A. muciniphila cultivated under basal medium and BHI medium (supplemented with 0.2% mucin) using nanoflow liquid chromatography-tandem mass spectrometry (nLC-MS/MS). |
| HostingRepository | PRIDE |
| AnnounceDate | 2024-10-22 |
| AnnouncementXML | Submission_2024-10-22_06:33:21.287.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Young Eun Kim |
| SpeciesList | scientific name: Akkermansia muciniphila ATCC BAA-835; NCBI TaxID: 349741; |
| ModificationList | iodoacetamide derivatized residue |
| Instrument | Q Exactive HF |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2023-05-18 05:43:41 | ID requested | |
| 1 | 2024-03-14 00:24:53 | announced | |
| 2 | 2024-04-09 02:16:43 | announced | 2024-04-09: Updated project metadata. |
| ⏵ 3 | 2024-10-22 06:33:22 | announced | 2024-10-22: Updated project metadata. |
Publication List
| Kang EJ, Kim JH, Kim YE, Lee H, Jung KB, Chang DH, Lee Y, Park S, Lee EY, Lee EJ, Kang HB, Rhyoo MY, Seo S, Park S, Huh Y, Go J, Choi JH, Choi YK, Lee IB, Choi DH, Seo YJ, Noh JR, Kim KS, Hwang JH, Jeong JS, Kwon HJ, Yoo HM, Son MY, Kim YG, Lee DH, Kim TY, Kwon HJ, Kim MH, Kim BC, Kim YH, Kang D, Lee CH, The secreted protein Amuc_1409 from Akkermansia muciniphila improves gut health through intestinal stem cell regulation. Nat Commun, 15(1):2983(2024) [pubmed] |
| 10.1038/s41467-024-47275-8; |
Keyword List
| submitter keyword: Akkermansia muciniphila, secretome, LC-MS/MS |
Contact List
| Dukjin Kang | |
|---|---|
| contact affiliation | Group for Biometrology, Korea Research Institute of Standards and Science (KRISS), Daejeon, 34113, Republic of Korea |
| contact email | djkang@kriss.re.kr |
| lab head | |
| Young Eun Kim | |
| contact affiliation | Center for Bioanalysis, Division of Chemical and Medical Metrology, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea |
| contact email | yekim1125@gmail.com |
| dataset submitter | |
Full Dataset Link List
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/03/PXD042323 |
| PRIDE project URI |
Repository Record List
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