PXD042321

PXD042321 is an original dataset announced via ProteomeXchange.

Title	Comparing extraction method efficiency for high-throughput palaeoproteomic bone species identification.
Description	12 Pleistocene bone samples were analyzed using LC-MS/MS in order to characterize their proteome for species identification and potential protein damage characteristics, comparing several different protein extraction methods.
HostingRepository	PRIDE
AnnounceDate	2024-01-15
AnnouncementXML	Submission_2024-01-15_02:02:33.953.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dorothea Mylopotamitaki
SpeciesList	scientific name: Hyaenidae; NCBI TaxID: 9676; scientific name: Ursidae; NCBI TaxID: 9632; scientific name: Rhinocerotidae; NCBI TaxID: 9803; scientific name: Ovis aries; NCBI TaxID: 9940; scientific name: Equidae; NCBI TaxID: 9788; scientific name: Felinae; NCBI TaxID: 338152; scientific name: Bovidae; NCBI TaxID: 9895; scientific name: Capra sp.; NCBI TaxID: 61294;
ModificationList	hydroxylated proline; 2-pyrrolidone-5-carboxylic acid (Glu); 2-pyrrolidone-5-carboxylic acid (Gln); N-ethylmaleimide derivatized cysteine; monohydroxylated residue; deamidated residue
Instrument	Orbitrap Exploris 480

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-18 05:34:56	ID requested
⏵ 1	2024-01-15 02:02:34	announced

10.1038/S41598-023-44885-Y;

submitter keyword: protein damage, collagen, HTS bone palaeoproteomics,Species identification, DDA, Non-collagenous proteins

Frido Welker
contact affiliation	Section for Molecular Ecology and Evolution, Biomolecular Palaeoanthropology Lab, Globe Institute, University of Copenhagen
contact email	frido.welker@sund.ku.dk
lab head
Dorothea Mylopotamitaki
contact affiliation	Chaire de Paléoanthropologie, CIRB (UMR 7241–U1050), Collège de France
contact email	dorothea.mylopotamitaki@palaeoproteomics.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042321

PRIDE project URI

• PRIDE
  1. PXD042321
     1. Label: PRIDE project
     2. Name: Comparing extraction method efficiency for high-throughput palaeoproteomic bone species identification.