PXD042172

PXD042172 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Cell surface-specific N-glycoproteomics
Description	To understand the cellular functions of glycans and to exploit them as clinical targets it is essential to acquire information on their cell surface exposure. Here, we developed a sensitive and specific mass spectrometry method to globally study the N-glycoforms displayed at individual protein sites on the cell surface. This offers a valuable tool to discriminate between functionally relevant glycans and biosynthetic intermediates for future cellular glycoproteomic analyses.
HostingRepository	PRIDE
AnnounceDate	2024-01-26
AnnouncementXML	Submission_2024-01-26_06:52:12.614.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Noortje de Haan
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-12 04:06:51	ID requested
⏵ 1	2024-01-26 06:52:13	announced

Publication List

10.1021/acs.analchem.3c03626;
de Haan N, Song M, Grant OC, Ye Z, Khoder Agha F, Koed M, ø, ller Aasted M, Woods RJ, Vakhrushev SY, Wandall HH, -Glycoproteomics Shows Profound Differences Between Glycosylation Sites and Subcellular Components. Anal Chem, 95(47):17328-17336(2023) [pubmed]

10.1021/acs.analchem.3c03626;

de Haan N, Song M, Grant OC, Ye Z, Khoder Agha F, Koed M, ø, ller Aasted M, Woods RJ, Vakhrushev SY, Wandall HH, -Glycoproteomics Shows Profound Differences Between Glycosylation Sites and Subcellular Components. Anal Chem, 95(47):17328-17336(2023) [pubmed]

Keyword List

submitter keyword: keratinocytes, N-glycan, glycoproteomics,cell surface, LC-MS/MS

submitter keyword: keratinocytes, N-glycan, glycoproteomics,cell surface, LC-MS/MS

Contact List

Hans Wandall
contact affiliation	Copenhagen Center for Glycomics, University of Copenhagen
contact email	hhw@sund.ku.dk
lab head
Noortje de Haan
contact affiliation	Copenhagen center for Glycomics, University of Copenhagen
contact email	ndehaan@sund.ku.dk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042172
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042172

PRIDE project URI

Repository Record List

[ + ]