PXD042116

PXD042116 is an original dataset announced via ProteomeXchange.

Title	Sperm and seminal fluids proteomes in selected passerine bird species
Description	This project contains sperm and seminal fluids proteomes from selected species of passerine birds: Taeniopygia guttata, Hirundo rustica, Chloris chloris, Acrocephalus palustris, Cinclus cinclus, Phylloscopus collybita. We employed label-free proteomics to generate proteomes in the zebra finch, a songbird species with annotated genome and five wild-living songbirds representing five families within the Passerida clade, all with poorly known genomes. The results show that protein mapping of the new passerine proteomes to zebra finch genome was successful, thus, yielding highly similar protein identifications and a sufficient number of unique peptides in all the studied proteomes.
HostingRepository	PRIDE
AnnounceDate	2025-06-02
AnnouncementXML	Submission_2025-06-02_03:41:11.093.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pavel Stopka
SpeciesList	scientific name: Cinclus cinclus; NCBI TaxID: 127875; scientific name: Phylloscopus collybita; NCBI TaxID: 48150; scientific name: Acrocephalus palustris; NCBI TaxID: 68475; scientific name: Hirundo rustica; NCBI TaxID: 43150; scientific name: Chloris chloris chloris; NCBI TaxID: 1471635; scientific name: Taeniopygia guttata (Zebra finch) (Poephila guttata); NCBI TaxID: 59729;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-10 06:18:42	ID requested
⏵ 1	2025-06-02 03:41:11	announced

10.25225/JVB.23045;

submitter keyword: Passerine,Sperm, birds

Pavel Stopka
contact affiliation	Department of Zoology, Faculty of Science, Charles University in Prague
contact email	pstopka@natur.cuni.cz
lab head
Pavel Stopka
contact affiliation	Department of Zoology, Charles University, Prague
contact email	pstopka@natur.cuni.cz
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD042116

PRIDE project URI

• PRIDE
  1. PXD042116
     1. Label: PRIDE project
     2. Name: Sperm and seminal fluids proteomes in selected passerine bird species