PXD042072

PXD042072 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme community
Description	Lyme disease is a result from an infection by the spirochete Borrelia burgdorferi, and is the leading vector-borne disease in North America. Due to the genomic and proteomic variability of different B. burgdorferi isolates, the study and further comparison of their proteome is key to understand the biology and infectivity of these spirochetes. Mass spectrometry-based proteomics was used to assemble peptide datasets of laboratory isolates B31, MM1, B31-ML23, and the infective isolates B31-5A4, B31-A3, and 297, as well as other public datasets, and is publicly available as the Borrelia PeptideAtlas (http://www.peptideatlas.org/builds/borrelia/). These datasets include information on total proteome, secretome, and membrane proteome of the B. burgdorferi.
HostingRepository	PRIDE
AnnounceDate	2025-05-06
AnnouncementXML	Submission_2025-05-06_13:35:21.744.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Helisa Wippel
SpeciesList	scientific name: Borrelia sp. tAG21; NCBI TaxID: 685064;
ModificationList	phosphorylated residue
Instrument	Q Exactive HF; Orbitrap Fusion Lumos; TripleTOF 5600; LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-08 19:42:40	ID requested
⏵ 1	2025-05-06 13:35:22	announced

Publication List

10.1038/s41597-024-04047-9;
Reddy PJ, Sun Z, Wippel HH, Baxter DH, Swearingen K, Shteynberg DD, Midha MK, Caimano MJ, Strle K, Choi Y, Chan AP, Schork NJ, Varela-Stokes AS, Moritz RL, Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme research. Sci Data, 11(1):1313(2024) [pubmed]

10.1038/s41597-024-04047-9;

Reddy PJ, Sun Z, Wippel HH, Baxter DH, Swearingen K, Shteynberg DD, Midha MK, Caimano MJ, Strle K, Choi Y, Chan AP, Schork NJ, Varela-Stokes AS, Moritz RL, Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme research. Sci Data, 11(1):1313(2024) [pubmed]

Keyword List

submitter keyword: Borrelia burgdorferi, proteomics, mass spectrometry

submitter keyword: Borrelia burgdorferi, proteomics, mass spectrometry

Contact List

Robert Moritz
contact affiliation	Institute for Systems Biology
contact email	rmoritz@systemsbiology.org
lab head
Helisa Wippel
contact affiliation	Institute for Systems Biology
contact email	hwippel@isbscience.org
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD042072
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/05/PXD042072

PRIDE project URI

Repository Record List

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