PXD042003

PXD042003 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Human plasma LC-MS/MS from children with bacterial and viral infections
Description	LC-MS/MS proteomic profiling was performed on children with bacterial and viral infections using plasma samples. Protein biomarkers indiciative of bacterial or viral infection were identified.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:14:10.801.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Heather Jackson
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-05 00:52:44	ID requested
1	2023-11-14 03:18:35	announced
2	2023-11-14 09:14:31	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 06:14:12	announced	2024-10-22: Updated project metadata.

Publication List

Jackson HR, Zandstra J, Menikou S, Hamilton MS, McArdle AJ, Fischer R, Thorne AM, Huang H, Tanck MW, Jansen MH, De T, Agyeman PKA, Von Both U, Carrol ED, Emonts M, Eleftheriou I, Van der Flier M, Fink C, Gloerich J, De Groot R, Moll HA, Pokorn M, Pollard AJ, Schlapbach LJ, Tsolia MN, Usuf E, Wright VJ, Yeung S, Zavadska D, Zenz W, Coin LJM, Casals-Pascual C, Cunnington AJ, Martinon-Torres F, Herberg JA, de Jonge MI, Levin M, Kuijpers TW, Kaforou M, Jackson HR, Zandstra J, Menikou S, Hamilton S, McArdle AJ, De T, Agyeman PKA, Von Both U, Carrol ED, Emonts M, Eleftheriou I, Van der Flier M, Fink C, De Groot R, Moll HA, Pokorn M, Pollard A, Schlapbach LJ, Tsolia M, Usuf E, Wright V, Yeung S, Zavadska D, Zenz W, Coin LJ, Cunnington AJ, Martinon-Torres F, Herberg J, De Jonge MI, Levin M, Kuijpers T, Kaforou M, Abdulla A, Aebi C, Agbeko R, Ali L, Alkema W, Allen K, Anderson S, Ansari I, Arif T, Avramoska T, Baas B, Bahovec N, Balode A, B, ã, rdzdina A, Barendregt AM, Barral-Arca R, Bath D, Bauchinger S, Baumard L, Baumgart H, Baxter F, Bell K, Bell A, Bello X, Bellos E, Benesch M, Bennet J, Berger C, Bernhard-Stirnemann S, Bibi S, Bidlingmaier C, Binder A, Binder V, Blackmore J, Bojang K, Borensztajn DM, Brengel-Pesce K, Broderick C, Buschbeck J, Calvo-Bado L, Carnota S, Carter MJ, Castro MB, Cebey-L, ó, pez M, Ceesay S, Ceolotto A, Chan A, Cocklin E, Collings K, Crulley S, Curras-Tuala MJ, D'alessandro U, D'Souza G, Danhauser K, Darboe S, Darnell S, De Haan L, De Vries G, Deksne D, Devine K, Dewez JE, Dik W, Dudley J, Eber E, Fabian D, Farto CB, Fern, á, ndez SS, Fidler K, Fitchett E, Galassini R, Gallisti S, Garc, í, a MB, Gardovska D, Geissler J, Gerrits GPJM, Giannoni E, Gloerich J, G, ó, mez-Carballa A, Gonz, á, lez F Á, Gores G, Gr, ã, vele D, Griese M, Grope I, Gurung M, Haas N, Habgood-Coote D, Hagedoorn NN, Haidl H, Harrison R, Hauer A, Heidema J, Heininger U, Henriet S, Hibberd M, Hoggart C, H, ö, sele S, Hourmat S, Hude C, Huijnen M, Iglesias PL, Iglesias MV, Jennings R, Johnson J, Jongerius I, Jorgensen R, Kahlert C, Kandasamy R, Kappler M, Keldorfer M, Kelly DF, Khanijau A, Kim N, Kim E, King S, Kolberg L, Kolnik M, Kloosterhuis L, Kohlf, ü, rst DS, Kohlmaier B, Krenn L, Leigh S, Leitner M, Leurent B, Lim E, Lin N, Liu CC, L, ö, ffler S, Lurz E, Mackerness C, Maconochie I, Mallet F, Marmarinos A, Martin A, Martin M, Martin, ó, n S, á, nchez JM, Martin, ó, n-Torres N, McAlinden P, McDonald S, McDonell A, Meiere A, Meierford A, Miedema CJ, Miners A, Mistry R, Mommert M, Morris S, Muench G, Murdoch DR, Mustafa S, Natalucci G, Neeleman C, Newall K, Nichols S, Niederer-Loher A, Niedrist T, Nijman R, Nokalna I, Nordberg G, O'Connor D, Obihara CC, Oliver Z, Oosthoek W, Ora MS, Osterman V, Pachot A, Pajkrt D, Pardo-Seco J, Pav, ã, re J, Paz IP, Paulus S, P, é, rez BM, Persand S, Pfleger A, Pfurtscheller K, Philipsen R, Pickering A, Pierce B, Pilch H, Pischedda S, P, ö, lz L, Posfay-Barbe KM, Powell O, Prunk P, Pu, č, uka Z, Rajic G, Rashid A, Redondo-Collazo L, Reiter K, Relly C, Rhodes M, Rial JG, Richmond V, Riedel T, Rivero Calle I, Roca A, R, ö, dl S, Rodr, í, guez LP, Rodr, í, guez-Tenreiro C, Romaine S, Rowlands E, Rudzate A, Sagmeister M, Saidykhan M, Sallas A, Sarr I, Schoen C, Schonenberg D, Schweintzger N, Secka F, Selecka K, Shah P, Shen CF, Shrestha S, Skrabl-Baumgartner A, Soon J, Sperl M, Sprenkeler E, Spyridis N, Srovin TP, Stampfer L, Stevens M, Stocker M, Strenger V, Su, á, rez CD, Svile D, Syggelou K, Tal C, Tambouratzi M, Tavliavini E, Thakker C, Thomson E, Throson S, Till H, Tramper-Stranders GA, Trasorras CS, Trobisch A, Urb, ã, ne UN, Usman M, Valentine L, Van Aerde K, Van den Berg JM, Van den Broek B, Van der Giessen I, Van der Kuip M, Van der Velden F, Van Furth AM, Van Gool AJ, Van Leur M, van Mierlo G, V, á, zquez SR, Vermont C, Vicente LG, Vincek K, Vito O, Voice M, Wallia D, Walsh B, Wang SM, Wedderburn C, Willems E, Wilson C, Wood A, Woodsford P, Wyss V, Xagorari M, Zachariasse J, Zaman SMA, Zurl C, Zwerenz M, A multi-platform approach to identify a blood-based host protein signature for distinguishing between bacterial and viral infections in febrile children (PERFORM): a multi-cohort machine learning study. Lancet Digit Health, 5(11):e774-e785(2023) [pubmed]
10.1016/s2589-7500(23)00149-8;

Jackson HR, Zandstra J, Menikou S, Hamilton MS, McArdle AJ, Fischer R, Thorne AM, Huang H, Tanck MW, Jansen MH, De T, Agyeman PKA, Von Both U, Carrol ED, Emonts M, Eleftheriou I, Van der Flier M, Fink C, Gloerich J, De Groot R, Moll HA, Pokorn M, Pollard AJ, Schlapbach LJ, Tsolia MN, Usuf E, Wright VJ, Yeung S, Zavadska D, Zenz W, Coin LJM, Casals-Pascual C, Cunnington AJ, Martinon-Torres F, Herberg JA, de Jonge MI, Levin M, Kuijpers TW, Kaforou M, Jackson HR, Zandstra J, Menikou S, Hamilton S, McArdle AJ, De T, Agyeman PKA, Von Both U, Carrol ED, Emonts M, Eleftheriou I, Van der Flier M, Fink C, De Groot R, Moll HA, Pokorn M, Pollard A, Schlapbach LJ, Tsolia M, Usuf E, Wright V, Yeung S, Zavadska D, Zenz W, Coin LJ, Cunnington AJ, Martinon-Torres F, Herberg J, De Jonge MI, Levin M, Kuijpers T, Kaforou M, Abdulla A, Aebi C, Agbeko R, Ali L, Alkema W, Allen K, Anderson S, Ansari I, Arif T, Avramoska T, Baas B, Bahovec N, Balode A, B, ã, rdzdina A, Barendregt AM, Barral-Arca R, Bath D, Bauchinger S, Baumard L, Baumgart H, Baxter F, Bell K, Bell A, Bello X, Bellos E, Benesch M, Bennet J, Berger C, Bernhard-Stirnemann S, Bibi S, Bidlingmaier C, Binder A, Binder V, Blackmore J, Bojang K, Borensztajn DM, Brengel-Pesce K, Broderick C, Buschbeck J, Calvo-Bado L, Carnota S, Carter MJ, Castro MB, Cebey-L, ó, pez M, Ceesay S, Ceolotto A, Chan A, Cocklin E, Collings K, Crulley S, Curras-Tuala MJ, D'alessandro U, D'Souza G, Danhauser K, Darboe S, Darnell S, De Haan L, De Vries G, Deksne D, Devine K, Dewez JE, Dik W, Dudley J, Eber E, Fabian D, Farto CB, Fern, á, ndez SS, Fidler K, Fitchett E, Galassini R, Gallisti S, Garc, í, a MB, Gardovska D, Geissler J, Gerrits GPJM, Giannoni E, Gloerich J, G, ó, mez-Carballa A, Gonz, á, lez F Á, Gores G, Gr, ã, vele D, Griese M, Grope I, Gurung M, Haas N, Habgood-Coote D, Hagedoorn NN, Haidl H, Harrison R, Hauer A, Heidema J, Heininger U, Henriet S, Hibberd M, Hoggart C, H, ö, sele S, Hourmat S, Hude C, Huijnen M, Iglesias PL, Iglesias MV, Jennings R, Johnson J, Jongerius I, Jorgensen R, Kahlert C, Kandasamy R, Kappler M, Keldorfer M, Kelly DF, Khanijau A, Kim N, Kim E, King S, Kolberg L, Kolnik M, Kloosterhuis L, Kohlf, ü, rst DS, Kohlmaier B, Krenn L, Leigh S, Leitner M, Leurent B, Lim E, Lin N, Liu CC, L, ö, ffler S, Lurz E, Mackerness C, Maconochie I, Mallet F, Marmarinos A, Martin A, Martin M, Martin, ó, n S, á, nchez JM, Martin, ó, n-Torres N, McAlinden P, McDonald S, McDonell A, Meiere A, Meierford A, Miedema CJ, Miners A, Mistry R, Mommert M, Morris S, Muench G, Murdoch DR, Mustafa S, Natalucci G, Neeleman C, Newall K, Nichols S, Niederer-Loher A, Niedrist T, Nijman R, Nokalna I, Nordberg G, O'Connor D, Obihara CC, Oliver Z, Oosthoek W, Ora MS, Osterman V, Pachot A, Pajkrt D, Pardo-Seco J, Pav, ã, re J, Paz IP, Paulus S, P, é, rez BM, Persand S, Pfleger A, Pfurtscheller K, Philipsen R, Pickering A, Pierce B, Pilch H, Pischedda S, P, ö, lz L, Posfay-Barbe KM, Powell O, Prunk P, Pu, č, uka Z, Rajic G, Rashid A, Redondo-Collazo L, Reiter K, Relly C, Rhodes M, Rial JG, Richmond V, Riedel T, Rivero Calle I, Roca A, R, ö, dl S, Rodr, í, guez LP, Rodr, í, guez-Tenreiro C, Romaine S, Rowlands E, Rudzate A, Sagmeister M, Saidykhan M, Sallas A, Sarr I, Schoen C, Schonenberg D, Schweintzger N, Secka F, Selecka K, Shah P, Shen CF, Shrestha S, Skrabl-Baumgartner A, Soon J, Sperl M, Sprenkeler E, Spyridis N, Srovin TP, Stampfer L, Stevens M, Stocker M, Strenger V, Su, á, rez CD, Svile D, Syggelou K, Tal C, Tambouratzi M, Tavliavini E, Thakker C, Thomson E, Throson S, Till H, Tramper-Stranders GA, Trasorras CS, Trobisch A, Urb, ã, ne UN, Usman M, Valentine L, Van Aerde K, Van den Berg JM, Van den Broek B, Van der Giessen I, Van der Kuip M, Van der Velden F, Van Furth AM, Van Gool AJ, Van Leur M, van Mierlo G, V, á, zquez SR, Vermont C, Vicente LG, Vincek K, Vito O, Voice M, Wallia D, Walsh B, Wang SM, Wedderburn C, Willems E, Wilson C, Wood A, Woodsford P, Wyss V, Xagorari M, Zachariasse J, Zaman SMA, Zurl C, Zwerenz M, A multi-platform approach to identify a blood-based host protein signature for distinguishing between bacterial and viral infections in febrile children (PERFORM): a multi-cohort machine learning study. Lancet Digit Health, 5(11):e774-e785(2023) [pubmed]

10.1016/s2589-7500(23)00149-8;

Keyword List

submitter keyword: LC-MS/MS, human, plasma

submitter keyword: LC-MS/MS, human, plasma

Contact List

Myrsini Kaforou
contact affiliation	Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK
contact email	m.kaforou@imperial.ac.uk
lab head
Heather Jackson
contact affiliation	Imperial College London
contact email	heather.jackson17@imperial.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD042003
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD042003

PRIDE project URI

Repository Record List

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