PXD041792

PXD041792 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	BioID screening experiment to map proteins linked to PHYHD1
Description	PHYHD1 is a 2-oxoglutarate-dependent dioxygenase. To shed light on the cellular function of human PHYHD1, we performed a BioID screening experiment to map proteins linked to PHYHD1 functionally. For that, we used HEK293T cells transiently expressing either BirA* or BirA*-tagged PHYHD1 in the absence or presence of biotin.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:00:03.952.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Elitsa Dimova
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	biotinylated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-04-25 00:59:10	ID requested
1	2023-05-27 13:16:50	announced
⏵ 2	2023-11-14 09:00:04	announced	2023-11-14: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: HEK293T, BioID, PHYHD1

submitter keyword: HEK293T, BioID, PHYHD1

Contact List

Prof. Peppi Karppinen
contact affiliation	University of Oulu Faculty of Biochemistry and Molecular Medicine Oulu, Finland
contact email	peppi.karppinen@oulu.fi
lab head
Elitsa Dimova
contact affiliation	Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland
contact email	elitsa.dimova@oulu.fi
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/05/PXD041792
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/05/PXD041792

PRIDE project URI

Repository Record List

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