PXD041684

PXD041684 is an original dataset announced via ProteomeXchange.

Title	Identification of the bacteriophage nucleus protein interaction network
Description	Here, we use proximity labeling and localization mapping to systematically identify proteins associated with the major nuclear shell protein chimallin (ChmA) and other distinctive structures assembled by these phages. We identify six uncharacterized nuclear shell-associated proteins, one of which directly interacts with self-assembled ChmA. The structure and protein-protein interaction network of this protein, which we term ChmB, suggests that it forms pores in the ChmA lattice that serve as docking sites for pro-capsid genome packaging, and may also participate in mRNA and/or protein transport.
HostingRepository	PRIDE
AnnounceDate	2024-01-26
AnnouncementXML	Submission_2024-01-26_09:41:02.303.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD041684
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Eray Enustun
SpeciesList	scientific name: Pseudomonas phage PhiPA3; NCBI TaxID: 998086;
ModificationList	biotinylated residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2023-04-20 07:38:42	ID requested
⏵ 1	2024-01-26 09:41:03	announced

10.6019/PXD041684;

Enustun E, Deep A, Gu Y, Nguyen KT, Chaikeeratisak V, Armbruster E, Ghassemian M, Villa E, Pogliano J, Corbett KD, Identification of the bacteriophage nucleus protein interaction network. Nat Struct Mol Biol, 30(11):1653-1662(2023) [pubmed]

10.1038/s41594-023-01094-5;

submitter keyword: Phage Nucleus, miniTurboID,Phage

Kevin Corbett
contact affiliation	Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA
contact email	kcorbett@health.ucsd.edu
lab head
Eray Enustun
contact affiliation	UCSD
contact email	eenustun@ucsd.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD041684

PRIDE project URI

• PRIDE
  1. PXD041684
     1. Label: PRIDE project
     2. Name: Identification of the bacteriophage nucleus protein interaction network