PXD041215

PXD041215 is an original dataset announced via ProteomeXchange.

Title	Changes in Protein Turn-over Rates Regulate Tryptophan and Glucosinolate Biosynthesis, IAA Transport and Photosynthesis in Arabidopsis Growth and Defense Transitions
Description	Changes in protein synthesis and degradation rates, transcript, protein and phytohormone abundance of 99 targets using qPCR and LC-MS parallel reaction monitoring (PRM) were measured in the transitions between optimal growth conditions (homeostasis), fully induced pattern triggered immunity (PTI) and back in Arabidopsis thaliana, chronologically. Protein turnover rates play an important role in the tryptophan and glucosinolate biosynthesis and photosynthesis associated (PAP) proteins. Most transcripts returned to normal levels 3 to 16 hours post elicitation, while protein levels remained at fully induced PTI levels up to 16 hours into the transitory phase back to optimal growth. Same measurements in the myc234 background revealed an important role of these transcription factors in the immune response including effects on protein turnover rates.
HostingRepository	PRIDE
AnnounceDate	2023-10-14
AnnouncementXML	Submission_2023-10-13_20:56:47.157.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	MohammadAbukhalaf
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2023-03-30 06:34:36	ID requested
⏵ 1	2023-10-13 20:56:47	announced

Dataset with its publication pending

submitter keyword: translational regulation, Photosynthesis, Protein degradation rates, PTI, Glucosinolates, MYC2, Phytohormone, Proteomics,Protein synthesis rates, Auxin, Pin proteins

WolfgangHoehenwarter
contact affiliation	Proteome Analytics Leibniz Institute of Plant Biochemistry
contact email	wolfgang.hoehenwarter@gmail.com
lab head
MohammadAbukhalaf
contact affiliation	Christian-Albrechts-Universität zu Kiel Systematic Proteomics and Bioanalytics
contact email	mohammad_ak@windowslive.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD041215

PRIDE project URI

• PRIDE
  1. PXD041215
     1. Label: PRIDE project
     2. Name: Changes in Protein Turn-over Rates Regulate Tryptophan and Glucosinolate Biosynthesis, IAA Transport and Photosynthesis in Arabidopsis Growth and Defense Transitions