PXD041190
PXD041190 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis |
Description | This project is “Medical proteome analysis of osteoporosis- and bone mass-related proteins using the Kibo Japanese Experiment Module of International Space Station (ISS)”. Applying proteomic technologies, this research aims to identify proteins involved in space flight-induced osteopenia as well as osteoporosis occurring on the ground by searching serum, bone and skeletal muscle (soleus, extensor digitorum longus) proteomes. The goal of this study is to get better understanding to protect the health of both astronauts and osteoporosis patients. Proteome analyses of skeletal muscles from male C57BL/6J mouse (spaceflight [n=6], hypergravity [n=5], hindlimb unloading [n=5]) were carried out tryptic digestion followed by LC-MS/MS analysis (DDA). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR threshold by searching against the decoy DB. |
HostingRepository | jPOST |
AnnounceDate | 2023-09-19 |
AnnouncementXML | Submission_2024-02-21_23:29:15.390.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Yayoi Kimura |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | unknown modification; L-methionine sulfoxide; S-carboxamidomethyl-L-cysteine; N6-carbamoyl-L-lysine; alpha-aminocarbamoylated residue; Acetyl |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2023-03-29 20:26:51 | ID requested | |
1 | 2023-09-19 00:41:42 | announced | |
⏵ 2 | 2024-02-21 23:29:16 | announced | 2024-02-22: Updated PubMed. |
Publication List
Ino Y, Ohira T, Kumagai K, Nakai Y, Akiyama T, Moriyama K, Takeda Y, Saito T, Ryo A, Inaba Y, Hirano H, Kimura Y, Identification of mouse soleus muscle proteins altered in response to changes in gravity loading. Sci Rep, 13(1):15768(2023) [pubmed] |
Keyword List
submitter keyword: mouse, soleus muscle, spaceflight, microgravity, hypergravity, hindlimb unloading |
Contact List
Yayoi Kimura | |
---|---|
lab head | |
Yayoi Kimura | |
contact affiliation | Yokohama City University |
dataset submitter |
Full Dataset Link List
jPOST dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST002107/ |