PXD041002

PXD041002 is an original dataset announced via ProteomeXchange.

Title	TMT data from ovarian cancer cells
Description	In this project we want to compare ovarian cell cancer treated or non treated with cis-platinum. As acquisition strategy we have used a Real Time Search MS3 method in an Orbitrap Eclipse. The acquisition cycle began with an MS1 scanwhere the most intense ions were selected for fragmentation in the ion trap using CID. MS2 spectra were searched in real time with data acquisition using the sp-human database. MS2 spectra with an Xcorr greater than or equal to 1 and less than 10 ppm precursor mas error, triggered the submission of an MS3 spectrum to the instrument. MS3 spectrum, were collected using the multinotch MS3-based TMT method, in a way were ten MS2 fragment ions were captured in the MS3 precursor population using isolation waveforms with multiple frequency notches
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:00:36.662.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Cristina Chiva
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Eclipse

Revision	Datetime	Status	ChangeLog Entry
0	2023-03-21 03:49:45	ID requested
1	2023-05-04 06:54:30	announced
2	2023-05-15 08:21:13	announced	2023-05-15: Updated project metadata.
3	2023-11-14 08:48:17	announced	2023-11-14: Updated project metadata.
⏵ 4	2023-11-14 09:00:37	announced	2023-11-14: Updated project metadata.

Declercq A, Bouwmeester R, Chiva C, Sabid, ó E, Hirschler A, Carapito C, Martens L, Degroeve S, Gabriels R, PIP web server supports cutting-edge proteomics applications. Nucleic Acids Res, 51(W1):W338-W342(2023) [pubmed]

submitter keyword: TMT cancer

Eduard Sabidó
contact affiliation	1. Proteomics Unit, Universitat Pompeu Fabra, 08003 Barcelona, Spain 2. Proteomics Unit, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), 08003 Barcelona, Spain
contact email	eduard.sabido@crg.eu
lab head
Cristina Chiva
contact affiliation	University Pompeu Fabra
contact email	cristina.chiva@upf.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/05/PXD041002

PRIDE project URI

• PRIDE
  1. PXD041002
     1. Label: PRIDE project
     2. Name: TMT data from ovarian cancer cells