PXD040856

PXD040856 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparison of gel and urea methods of digestion for proteomic analysis of organ perfusion solutions
Description	The aim of this study was to develop an optimized Shotgun proteomics method for perusate by comparing and identifying the most effective and reliable techniques for protein estimation and digestion.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:26:31.144.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sadr Shaheed
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-03-14 06:42:25	ID requested
1	2024-01-26 07:59:34	announced
⏵ 2	2024-10-22 06:26:34	announced	2024-10-22: Updated project metadata.

Publication List

Snashall CM, Sutton CW, Faro LL, Ceresa C, Ploeg R, Shaheed SU, Comparison of in-gel and in-solution proteolysis in the proteome profiling of organ perfusion solutions. Clin Proteomics, 20(1):51(2023) [pubmed]
10.1186/s12014-023-09440-x;

Snashall CM, Sutton CW, Faro LL, Ceresa C, Ploeg R, Shaheed SU, Comparison of in-gel and in-solution proteolysis in the proteome profiling of organ perfusion solutions. Clin Proteomics, 20(1):51(2023) [pubmed]

10.1186/s12014-023-09440-x;

Keyword List

submitter keyword: kidney, liver, proteomic, organ transplantation,Perfusate

submitter keyword: kidney, liver, proteomic, organ transplantation,Perfusate

Contact List

Dr Sadr ul Shaheed
contact affiliation	Nuffield department of Surgical Sciences, University ofOxford UK
contact email	sadr.shaheed@nds.ox.ac.uk
lab head
Sadr Shaheed
contact affiliation	Nuffield Department of Surgical Sciences, University of Oxford, Oxford, United Kingdom
contact email	sadr.shaheed@nds.ox.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD040856
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD040856

PRIDE project URI

Repository Record List

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