PXD040628

PXD040628 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Functional redundancy for the metabolic exchange of siderophores, vitamins, nitrogen, and phosphorus underpins the interactions in the Trichodesmium consortium
Description	Proteomic measurements from cyanobacteria colonies picked from the Gulf of Aqaba (Red Sea); analyzed to reveal interaction of cyanobacteria Trichodesmium and its taxonomically diverse microbial community partners. Samples were digested with trypsin, fractionated, and analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline against a metagenomics FASTA file sequenced at JGI.
HostingRepository	MassIVE
AnnounceDate	2023-10-30
AnnouncementXML	Submission_2023-10-30_10:14:13.972.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Trichodesmium sp.; NCBI TaxID: 1207;
ModificationList	Oxidation
Instrument	Q Exactive Plus

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-03-06 09:58:38	ID requested
⏵ 1	2023-10-30 10:14:14	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: cyanobacteria, siderophore, denitrification, microbial community, proteomics

submitter keyword: cyanobacteria, siderophore, denitrification, microbial community, proteomics

Contact List

Yaela Shaked
contact affiliation	Hebrew University of Jerusalem
contact email	yeala.shaked@mail.huji.ac.il
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000091416/