PXD040612

PXD040612 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Rab35 knockdown in primary mouse hepatoblasts
Description	To study the role of Rab35 in the formation of bile canaliculi, primary mouse hepatoblasts were acquired, cultured in matrigel, and subjected to Rab35 knockdown by siRNA with scrambled control (4 biol. replicates each, block-randomised). Samples were subjected to S-trap protein digest and label-free quantification by staggered DIA demultiplexed with MSConvert and processed with DIA-NN, followed by differential expression and gene set enrichment analysis.
HostingRepository	MassIVE
AnnounceDate	2024-09-23
AnnouncementXML	Submission_2024-09-23_08:40:12.915.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tobias Jumel
SpeciesList	scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090;
ModificationList	L-methionine sulfoxide; L-cysteine methyl disulfide
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-03-06 04:12:15	ID requested
⏵ 1	2024-09-23 08:40:13	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: DIA, LFQ, Mouse, Hepatoblasts

submitter keyword: DIA, LFQ, Mouse, Hepatoblasts

Contact List

Andrej Shevchenko
contact affiliation	MPI-CBG Dresden
contact email	shevchenko@mpi-cbg.de
lab head
Tobias Jumel
contact affiliation	MPI-CBG
contact email	tobias.jumel@web.de
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v05/MSV000091413/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v05/MSV000091413/