PXD040283

PXD040283 is an original dataset announced via ProteomeXchange.

Title	Liquid C1 fermentation differential proteomic analysis of Eubacterium limosum
Description	Some acetogenic bacteria, such as Eubacterium limosum, have the native ability to consume liquid C1 feedstocks, such as formate and methanol, as the sole substrate for growth. Due to high energy efficiency, and compatibility with existing infrastructure, this has sparked interest in the biotechnology industry. Previously, we reported limitations of this metabolism in batch fermentation. Here we undertook chemostat differential analysis to highlight key features and bottlenecks of metabolism. Our work serves as a reference dataset to advance understanding of liquid C1 metabolism in acetogens.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:44:45.047.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jamin Wood
SpeciesList	scientific name: Eubacterium limosum; NCBI TaxID: 1736;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Revision	Datetime	Status	ChangeLog Entry
0	2023-02-20 07:12:23	ID requested
1	2023-04-12 20:09:53	announced
⏵ 2	2024-10-22 05:44:45	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: acetogen

DIA

data-independent acquisition, methanol

formate

A/Prof Esteban Marcellin
contact affiliation	Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, Australia
contact email	e.marcellin@uq.edu.au
lab head
Jamin Wood
contact affiliation	The University of Queensland
contact email	jamin.wood@uq.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD040283

PRIDE project URI

• PRIDE
  1. PXD040283
     1. Label: PRIDE project
     2. Name: Liquid C1 fermentation differential proteomic analysis of Eubacterium limosum