PXD039718

PXD039718 is an original dataset announced via ProteomeXchange.

Title	The thigh muscle metabolic response is linked to feed efficiency and meat characteristics in slow-growing chicken
Description	Since the effect of selection for better feed efficiency on meat characteristics is largely unknown. Thus, the aim of this study was to identify key proteins and pathways regulating both FE traits and meat characteristics. At ten weeks of age, thigh muscle samples from six birds (three with high FCR and three with low FCR value) were selected, and their proteomes were investigated using a label-free proteomic method. Weighted gene co-expression network analysis (WGCNA) was used to screen the key protein modules and pathways. We found that glycolysis/gluconeogenesis, metabolic pathway, carbon metabolism, biosynthesis of amino acids, pyruvate metabolism, and protein processing in endoplasmic reticulum play a key role underlying these two traits. Thus, selection practices for KR should simultaneously consider both trait groups to maintain the high meat quality of slow-growing chicken while improving FE.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:56:06.525.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pramin Kaewsatuan
SpeciesList	scientific name: Gallus gallus (Chicken); NCBI TaxID: 9031;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2023-01-27 10:53:26	ID requested
1	2023-07-20 11:20:46	announced
2	2023-11-14 09:03:19	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 05:56:07	announced	2024-10-22: Updated project metadata.

10.1016/j.psj.2023.102741;

Kaewsatuan P, Poompramun C, Kubota S, Yongsawatdigul J, Molee W, Uimari P, Molee A, Thigh muscle metabolic response is linked to feed efficiency and meat characteristics in slow-growing chicken. Poult Sci, 102(7):102741(2023) [pubmed]

submitter keyword: meat characteristics,slow-growing chicken

Amonrat Molee
contact affiliation	School of Animal Technology and Innovation
contact email	amonrat@sut.ac.th
lab head
Pramin Kaewsatuan
contact affiliation	Suranaree University of Technology
contact email	hot-hot-mint@hotmail.co.th
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD039718

PRIDE project URI

• PRIDE
  1. PXD039718
     1. Label: PRIDE project
     2. Name: The thigh muscle metabolic response is linked to feed efficiency and meat characteristics in slow-growing chicken