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PXD039103

PXD039103 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleThe S/T/Y-linked residue pairs identified by current software are unreliable
DescriptionHere, by setting amino acids with chemically inert side chains such as glycine (G), valine (V), and leucine (L) as cross-linkable sites, which serves as a negative control, we show that the identifications of S/T/Y-linked peptides are as reliable as those of G/V/L-linked peptides. This is true across different NHS ester cross-linkers including DSS, DSSO, and DSBU, and across different search engines including MeroX, xiSearch, and pLink.
HostingRepositoryiProX
AnnounceDate2022-12-26
AnnouncementXMLSubmission_2022-12-26_22:13:48.553.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterYong Cao
SpeciesList scientific name: Bos taurus; NCBI TaxID: 9913;
ModificationListNo PTMs are included in the dataset
InstrumentOrbitrap Fusion; Q Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-12-26 19:10:20ID requested
12022-12-26 19:10:38announced
22022-12-26 22:13:48announced2022-12-27: Update information
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: CXMS, cross-linking MS, S/T/Y-cross-link
Contact List
Mengqiu Dong
contact affiliationNational Institute of Biological Sciences, Beijing
contact emaildongmengqiu@nibs.ac.cn
lab head
Yong Cao
contact affiliationNational Institute of Biological Sciences, Beijing
contact emailcaoyong@nibs.ac.cn
dataset submitter
Full Dataset Link List
iProX dataset URI