PXD039084 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteome analysis of contrasting rice genotypes under phosphorus-starvation stress |
Description | This study aims to deal with a comparative proteome analysis of shoot and root tissues of contrasting phosphorus (P) responsive rice genotypes (Pusa-44 and its near-isogenic line (NIL)-23 harboring Pup1 QTL). Proteins were isolated from shoot and root tissues collected from 45-day-old rice plants grown hydroponically in PusaRicH medium with P (16ppm, +P) or without P (0 ppm, -P) under controlled environmental conditions. Following protein quantification using the Bradford method, and quality check using 1D SDS-PAGE, trypsin was used for in-solution digestion and Nano ACQUITY UPLC-MS/MS was used to separate and identify peptides. This study aimed at deciphering the molecular aspect of Pup1 QTL in P-starvation stress tolerance in rice. |
HostingRepository | PRIDE |
AnnounceDate | 2023-02-27 |
AnnouncementXML | Submission_2023-02-27_05:34:04.206.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | SureshKumar |
SpeciesList | scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Synapt MS |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-12-22 04:26:25 | ID requested | |
⏵ 1 | 2023-02-27 05:34:04 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: phosphorus-starvation stress, proteome analysis, label-free quantification,Rice |
Contact List
Dr. SureshKumar |
contact affiliation | ICAI-Indian Agricultural Research Institute, New Delhi, India |
contact email | sureshkumar3_in@yahoo.co.uk |
lab head | |
SureshKumar |
contact affiliation | Indian Agricultural Research Institute |
contact email | sureshkumar3_in@yahoo.co.uk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD039084
- Label: PRIDE project
- Name: Proteome analysis of contrasting rice genotypes under phosphorus-starvation stress