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PXD039084

PXD039084 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteome analysis of contrasting rice genotypes under phosphorus-starvation stress
DescriptionThis study aims to deal with a comparative proteome analysis of shoot and root tissues of contrasting phosphorus (P) responsive rice genotypes (Pusa-44 and its near-isogenic line (NIL)-23 harboring Pup1 QTL). Proteins were isolated from shoot and root tissues collected from 45-day-old rice plants grown hydroponically in PusaRicH medium with P (16ppm, +P) or without P (0 ppm, -P) under controlled environmental conditions. Following protein quantification using the Bradford method, and quality check using 1D SDS-PAGE, trypsin was used for in-solution digestion and Nano ACQUITY UPLC-MS/MS was used to separate and identify peptides. This study aimed at deciphering the molecular aspect of Pup1 QTL in P-starvation stress tolerance in rice.
HostingRepositoryPRIDE
AnnounceDate2023-02-27
AnnouncementXMLSubmission_2023-02-27_05:34:04.206.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSureshKumar
SpeciesList scientific name: Oryza sativa (Rice); NCBI TaxID: 4530;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentSynapt MS
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-12-22 04:26:25ID requested
12023-02-27 05:34:04announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: phosphorus-starvation stress, proteome analysis, label-free quantification,Rice
Contact List
Dr. SureshKumar
contact affiliationICAI-Indian Agricultural Research Institute, New Delhi, India
contact emailsureshkumar3_in@yahoo.co.uk
lab head
SureshKumar
contact affiliationIndian Agricultural Research Institute
contact emailsureshkumar3_in@yahoo.co.uk
dataset submitter
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Dataset FTP location
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