PXD039042

PXD039042 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Kuzmin_Park_c4orf19_BioID_P88_2022
Description	This dataset consists of 6 raw MS files and associated peak lists and result files, acquired on a SCIEX TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Elena Kuzmin and affinity purification and mass spectrometric acquisition was performed by Kento Abe. Analysis was performed by Kento Abe and Anne-Claude Gingras. The files are associated with a manuscript submitted for publication by Kuzmin et al. This study identifies chromosome 4p as a frequently deleted region in basal breast cancer, associated with poor prognosis, evolves early during cancer progression and confers onto cells a proliferative state. Context-specific dosage sensitivity revealed genetic network rewiring maintaining large chromosomal deletions revealing a novel member of the STRIPAK complex, c4orf19. Morag Park is the corresponding author of the manuscript (morag.park@mcgill.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
HostingRepository	MassIVE
AnnounceDate	2024-02-29
AnnouncementXML	Submission_2024-02-29_08:18:19.532.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Gingras Lab
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide
Instrument	TripleTOF 6600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-12-21 09:50:13	ID requested
⏵ 1	2024-02-29 08:18:19	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: BioID, Proximity-dependent biotinylation, Affinity purification, c4orf19

submitter keyword: BioID, Proximity-dependent biotinylation, Affinity purification, c4orf19

Contact List

Anne-Claude Gingras
contact affiliation	LTRI
contact email	gingras@lunenfeld.ca
lab head
Gingras Lab
contact affiliation	Samuel Lunenfeld Research Institute
contact email	gingras@mshri.on.ca
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v05/MSV000090947/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v05/MSV000090947/