PXD038809

PXD038809 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Elucidating the RNA-protein Interactomes of Target RNAs in Tissue
Description	Raw mass spec files for the protein interactomes of MALAT1, polyadenylated RNA, and scrambled controls in mouse liver and patient derived prostate tumor xenografts XG147 and XG77 as determined by HyPR-MS.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:04:21.294.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Isabella Whitworth
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-12-13 22:54:59	ID requested
1	2023-07-30 15:39:30	announced
⏵ 2	2023-11-14 09:04:30	announced	2023-11-14: Updated project metadata.

Publication List

Whitworth IT, Henke KB, Yang B, Scalf M, Frey BL, Jarrard DF, Smith LM, Elucidating the RNA-Protein Interactomes of Target RNAs in Tissue. Anal Chem, 95(18):7087-7092(2023) [pubmed]

Whitworth IT, Henke KB, Yang B, Scalf M, Frey BL, Jarrard DF, Smith LM, Elucidating the RNA-Protein Interactomes of Target RNAs in Tissue. Anal Chem, 95(18):7087-7092(2023) [pubmed]

Keyword List

submitter keyword: MALAT1,proteomics, mass spectrometry, hybridization, lncRNA, RNA metabolism, interactome, RNA binding proteins

submitter keyword: MALAT1,proteomics, mass spectrometry, hybridization, lncRNA, RNA metabolism, interactome, RNA binding proteins

Contact List

Lloyd M Smith
contact affiliation	Department of Chemistry
contact email	smith@chem.wisc.edu
lab head
Isabella Whitworth
contact affiliation	University of Wisconsin-Madison
contact email	iwhitworth@wisc.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD038809
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD038809

PRIDE project URI

Repository Record List

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