PXD038645

PXD038645 is an original dataset announced via ProteomeXchange.

Title	Proteomic profiling of canine (dog) serum and urine
Description	Companion dog care market is annually increasing. A relationship with a dog who lives with humans gives a lot of psychological stability. Therefore, companion dog's health is important to the owner. It would be of great help if a non-invasive method could monitor health through bodily fluids (urine, serum). In addition to this, it is principal to discover and verify protein biomarkers that can detect the presence or absence of disease. Despite the growing application of proteomics in biomarker research using canine serum or urine, there is no spectral assay library publicly available. Here, we set up spectral assay libraries for canine serum and urine samples using 24 midpH-fractionated samples to enable deep proteome coverage. The canine serum assay library includes 4,749 protein groups and 25,228 peptides and urine assay library contains 1,132 protein groups and 5,483 peptides.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:05:04.695.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Hee-Sung Ahn
SpeciesList	scientific name: Canis lupus familiaris; NCBI TaxID: NCBITaxon:9615;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2022-12-07 08:00:14	ID requested
1	2023-09-03 18:06:59	announced
⏵ 2	2023-11-14 09:05:05	announced	2023-11-14: Updated project metadata.

Ahn HS, Yeom J, Yu J, Oh Y, Hong J, Kim M, Kim K, Generating Detailed Spectral Libraries for Canine Proteomes Obtained from Serum and Urine. Sci Data, 10(1):241(2023) [pubmed]

submitter keyword: Canis lupus familiaris, Serum, Spectrum library, Urine, LC-MS/MS

Kyunggon Kim
contact affiliation	Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea.
contact email	kkkon1@amc.seoul.kr
lab head
Hee-Sung Ahn
contact affiliation	Asan Medical Center
contact email	zaulim3@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD038645

PRIDE project URI

• PRIDE
  1. PXD038645
     1. Label: PRIDE project
     2. Name: Proteomic profiling of canine (dog) serum and urine