PXD038520

PXD038520 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Definitive Screening Design to Improve Data-Independent MS Analysis of Neuropeptides
Description	A definitive screening design was used to systematically optimize a DIA workflow for crustacean neuropeptide quantitation. We were able to assess several parameters for their effect on increasing quantifiable neuropeptides and predict the optimal value for these parameters.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:45:37.905.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ashley Phetsanthad
SpeciesList	scientific name: Callinectes sapidus; NCBI TaxID: 6763;
ModificationList	amidated residue; acetylated residue; monohydroxylated residue; cyclized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-12-02 17:56:04	ID requested
1	2023-05-10 14:38:48	announced
2	2023-11-14 08:47:39	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 05:45:38	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.jproteome.3c00088;
Phetsanthad A, Carr AV, Fields L, Li L, Definitive Screening Designs to Optimize Library-Free DIA-MS Identification and Quantification of Neuropeptides. J Proteome Res, 22(5):1510-1519(2023) [pubmed]

10.1021/acs.jproteome.3c00088;

Phetsanthad A, Carr AV, Fields L, Li L, Definitive Screening Designs to Optimize Library-Free DIA-MS Identification and Quantification of Neuropeptides. J Proteome Res, 22(5):1510-1519(2023) [pubmed]

Keyword List

submitter keyword: design of experiments,neuropeptides, label-free quantitation, library-free

submitter keyword: design of experiments,neuropeptides, label-free quantitation, library-free

Contact List

Lingjun Li
contact affiliation	University of Wisconsin-Madison, Department of Chemistry and School of Pharmacy, Madison, Wisconsin, USA
contact email	lingjun.li@wisc.edu
lab head
Ashley Phetsanthad
contact affiliation	University of Wisconsin - Madison
contact email	ashphets@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/05/PXD038520
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/05/PXD038520

PRIDE project URI

Repository Record List

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