PXD038175 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Genome sequence and annotation of the fungus Periconia digitata |
| Description | The Periconia genus belongs to the phylum Ascomycota, order Pleosporales, family Periconiaceae. Periconia is widespread in many habitats but little is known about its ecology. Several species produce bioactive molecules, among them, Periconia digitata extracts were shown to be deadly active against the pine wilt nematode. The strain CNCM I-4278, here identified as P. digitata was able to inhibit the plant pathogen Phytophthora parasitica. Since P. digitata has great potential as biocontrol agent and the only other genome available in the Periconiaceae family is that of Periconia macrospinosa, which is quite fragmentary, we generated long-read genomic data for P. digitata. Thanks to the PacBio Hifi sequencing technology, we obtained a high-quality genome with a total length of 38,967,494 bp, represented by 13 haploid chromosomes. The transcriptomic and proteomic data strengthen and support the genome annotation. Besides representing a new reference genome within the Periconiaceae, this work will also contribute in our understanding of the Eukaryotic tree of life. Not least, opens new possibilities to the biotechnological use of the species. |
| HostingRepository | PRIDE |
| AnnounceDate | 2023-11-14 |
| AnnouncementXML | Submission_2023-11-14_07:00:27.897.xml |
| DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD038175 |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Cyril Van Ghelder |
| SpeciesList | scientific name: Periconia digitata; NCBI TaxID: 1303443; |
| ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
| Instrument | timsTOF Pro |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2022-11-16 14:32:00 | ID requested | |
| 1 | 2023-08-04 04:01:08 | announced | |
| ⏵ 2 | 2023-11-14 07:00:28 | announced | 2023-11-14: Updated project metadata. |
Publication List
Keyword List
| submitter keyword: Ascomycota, proteogenomics, agecanonix, panoramix, Y3 strain, biocontrol, abraracoursix, Pleosporales, Periconia digitata |
Contact List
| Aurélie Seassau |
|---|
| contact affiliation | UMR Institut Sophia Agrobiotech, INRAE 1355, CNRS and Université Côte d’Azur, 400, Route des Chappes, BP 167, 06903 Sophia Antipolis Cedex, France |
| contact email | aurelie.seassau@inrae.fr |
| lab head | |
| Cyril Van Ghelder |
|---|
| contact affiliation | UMR Institut Sophia Agrobiotech, INRAE 1355, CNRS and Université Côte d’Azur, 400, Route des Chappes, BP 167, 06903 Sophia Antipolis Cedex, France |
| contact email | cyril.van-ghelder@inrae.fr |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/08/PXD038175 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD038175
- Label: PRIDE project
- Name: Genome sequence and annotation of the fungus Periconia digitata
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