PXD037925

PXD037925 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	In-vitro human gut microbiota culture with added sugars
Description	Three human gut microbiome samples from different individuals were cultured in an optimized culture medium with or without the presence of different sugars (10 mM glucose, 20 mM fructose, 10 mM glucose + 20 mM fructose, or 10 mM kestose). Samples were cultured in technical triplicates, and were taken at 0 hr, 1hr, 5 hr, 12 hr and 24 hr of culturing for optical density and metaproteomic analyses. Cultured microbiota cells were subjected to metaproteomics analysis using LC-MS/MS and a TMT approach.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:45:19.120.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Zhibin Ning
SpeciesList	scientific name: human gut metagenome; NCBI TaxID: 408170;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-11-03 04:52:47	ID requested
1	2024-06-15 23:12:46	announced
⏵ 2	2024-10-22 06:45:24	announced	2024-10-22: Updated project metadata.

Publication List

Wang T, Li L, Figeys D, Liu YY, Pairing metagenomics and metaproteomics to characterize ecological niches and metabolic essentiality of gut microbiomes. ISME Commun, 4(1):ycae063(2024) [pubmed]
10.1093/ismeco/ycae063;

Wang T, Li L, Figeys D, Liu YY, Pairing metagenomics and metaproteomics to characterize ecological niches and metabolic essentiality of gut microbiomes. ISME Commun, 4(1):ycae063(2024) [pubmed]

10.1093/ismeco/ycae063;

Keyword List

submitter keyword: human gut microbiome, in vitro study, metaproteomics

submitter keyword: human gut microbiome, in vitro study, metaproteomics

Contact List

Daniel Figeys
contact affiliation	Faculty of Medicine, University of Ottawa, Canada
contact email	dfigeys@uottawa.ca
lab head
Zhibin Ning
contact affiliation	research associate
contact email	ningzhibin@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD037925
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD037925

PRIDE project URI

Repository Record List

[ + ]