PXD037923

PXD037923 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	In-vitro culture of single gut bacterial strains with added sugars
Description	Gut commensal bacterial strains were cultured with or without added sugars (glucose, sucrose and kestose). The base culture medium without sugar added were modified based on the Yeast Casitone Fatty Acids (YCFA) broth. Samples were analyzed for proteomics using LC-MS/MS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:47:18.194.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Zhibin Ning
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Bacteroides ovatus ATCC 8483; NCBI TaxID: 411476; scientific name: Blautia hydrogenotrophica DSM 10507; NCBI TaxID: 476272; scientific name: Bacteroides uniformis ATCC 8492; NCBI TaxID: 411479; scientific name: Phocaeicola vulgatus ATCC 8482; NCBI TaxID: 435590; scientific name: Bacteroides thetaiotaomicron; NCBI TaxID: 818;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-11-03 04:52:07	ID requested
1	2023-06-08 02:49:32	announced
2	2023-11-14 09:01:02	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 05:47:18	announced	2024-10-22: Updated project metadata.

Publication List

10.1038/S41467-023-39149-2;

10.1038/S41467-023-39149-2;

Keyword List

submitter keyword: proteomics,single strains, culturing

submitter keyword: proteomics,single strains, culturing

Contact List

Daniel Figeys
contact affiliation	Faculty of Medicine, University of Ottawa, Canada
contact email	dfigeys@uottawa.ca
lab head
Zhibin Ning
contact affiliation	research associate
contact email	ningzhibin@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD037923
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD037923

PRIDE project URI

Repository Record List

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