PXD037751

PXD037751 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	An Optimized Suspension Trapping (S-Trap) Method for Phosphoproteomics Sample Preparation
Description	The performance of the S-Trap protocol for phosphoproteomics studies for proteome and phosphoproteome was systematically evaluated in big-scale and small-scale samples. The results showed the existing protocol was problematic for phsophopeptides enrichment. After employing optimized S-Trap methodology, more peptides and phosphopeptides are found in the application for extracellular vesicles.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:48:48.252.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Fujia Wang
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-10-27 02:26:11	ID requested
1	2023-06-19 06:27:13	announced
2	2023-11-14 09:01:25	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 05:48:49	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.analchem.3c00324;
Wang F, Veth T, Kuipers M, Altelaar M, Stecker KE, Optimized Suspension Trapping Method for Phosphoproteomics Sample Preparation. Anal Chem, 95(25):9471-9479(2023) [pubmed]

10.1021/acs.analchem.3c00324;

Wang F, Veth T, Kuipers M, Altelaar M, Stecker KE, Optimized Suspension Trapping Method for Phosphoproteomics Sample Preparation. Anal Chem, 95(25):9471-9479(2023) [pubmed]

Keyword List

submitter keyword: Phosphoproteomics
sample preparation
method optimization

submitter keyword: Phosphoproteomics

sample preparation

method optimization

Contact List

Maarten Altelaar
contact affiliation	Biomolecular Mass Spectrometry and Proteomics group, Utrecht University, The Netherlands
contact email	m.altelaar@uu.nl
lab head
Fujia Wang
contact affiliation	Utrecht University
contact email	f.wang3@uu.nl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD037751
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD037751

PRIDE project URI

Repository Record List

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