PXD037565

PXD037565 is an original dataset announced via ProteomeXchange.

Title	Polyethylene terephthalate and its monomers degradation by Ideonella sakaiensis (secreted)
Description	Synthetic plastics, like polyethylene terephthalate (PET), have become an essential part of modern life. Many of these products are remarkably persistent in the environment, and the accumulation in the environment is recognised as a major threat. Therefore, an increasing interest has been paid to screen for organisms able to degrade and assimilate the plastic. Ideonella sakaiensis was isolated from a plastisphere, a bacterium that solely was thriving on the degradation on PET films. The processes affected by the presence of PET, terephthalic acid, ethylene glycol, ethyl glycolate, and sodium glyoxylate monohydrate was elucidated by differential proteomes. The exposure of PET and its monomers seem to affect two major pathways, the TCA cycle and the β-oxidation pathway, since multiple of the conditions resulted in an increased expression of proteins directly or indirectly involved in these pathways, underlying the importance in the degradation of PET by I. sakaiensis.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:58:18.809.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD037565
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jan Struckmann Poulsen
SpeciesList	scientific name: Ideonella sakaiensis; NCBI TaxID: 1547922;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2022-10-19 03:06:11	ID requested
1	2023-04-04 02:16:30	announced
⏵ 2	2023-11-14 08:58:19	announced	2023-11-14: Updated project metadata.

10.6019/PXD037565;

submitter keyword: Ideonella sakaiensis,Plastic degrader, proteomics, polyethylene terephthalate, β-oxidation, ethylene glycol, polyhydroxyalkanoate, terephthalic acid

Jeppe Lund Nielsen
contact affiliation	Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark
contact email	jln@bio.aau.dk
lab head
Jan Struckmann Poulsen
contact affiliation	Aalborg University
contact email	jsp@bio.aau.dk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD037565

PRIDE project URI

• PRIDE
  1. PXD037565
     1. Label: PRIDE project
     2. Name: Polyethylene terephthalate and its monomers degradation by Ideonella sakaiensis (secreted)