PXD037428

PXD037428 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	DIA MS analysis of primary breast cancers with no recurrence
Description	We employed our recently developed proteogenomic workflow (De Marchi et al, 2021) to analyze a cohort of 21 primary breast cancers by RNA sequencing and mass spectrometry.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_07:42:35.098.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tommaso De Marchi
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-10-14 06:44:02	ID requested
1	2023-02-03 10:32:20	announced
⏵ 2	2023-11-14 07:42:38	announced	2023-11-14: Updated project metadata.

Publication List

De Marchi T, Pyl PT, Sj, ö, str, ö, m M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, W, ä, rnberg F, Fredriksson I, Malmstr, ö, m P, Fern, ö M, Malmstr, ö, m L, Malmst, ö, m J, Nim, é, us E, Proteogenomics decodes the evolution of human ipsilateral breast cancer. Commun Biol, 6(1):139(2023) [pubmed]

De Marchi T, Pyl PT, Sj, ö, str, ö, m M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, W, ä, rnberg F, Fredriksson I, Malmstr, ö, m P, Fern, ö M, Malmstr, ö, m L, Malmst, ö, m J, Nim, é, us E, Proteogenomics decodes the evolution of human ipsilateral breast cancer. Commun Biol, 6(1):139(2023) [pubmed]

Keyword List

submitter keyword: DIA,breast cancer

submitter keyword: DIA,breast cancer

Contact List

Emma Niméus
contact affiliation	Oncology, Pathology, Surgery - LUND UNIVERSITY
contact email	emma.nimeus@med.lu.se
lab head
Tommaso De Marchi
contact affiliation	Lund University
contact email	tommaso.de_marchi@med.lu.se
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD037428
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD037428

PRIDE project URI

Repository Record List

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