PXD037334

PXD037334 is an original dataset announced via ProteomeXchange.

Title	Metaproteomic analysis of dichloromethane-fermenting enrichment culture DFE
Description	Enrichment culture DFE is capable of fermenting the toxic pollutant dichloromethane (DCM; CH2Cl2) into environmentally benign acetate. The dominant organism in the enrichment culture is a novel bacterium in the Peptococcaceae family, “Candidatus Formimonas warabiya” strain DCMF. This metaproteomic study analysed culture DFE during growth with four substrates – DCM, glycine betaine, choline, and methanol – all of which are primarily, if not solely, metabolised by strain DCMF.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:39:00.020.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sophie Holland
SpeciesList	scientific name: Candidatus Formimonas warabiya; NCBI TaxID: 1761012;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2022-10-12 08:32:56	ID requested
1	2023-03-11 00:06:12	announced
⏵ 2	2023-11-14 08:39:01	announced	2023-11-14: Updated project metadata.

Holland SI, V, á, zquez-Campos X, Ertan H, Edwards RJ, Manefield MJ, Lee M, Formimonas warabiya' strain DCMF. Front Microbiol, 13():1035247(2022) [pubmed]

submitter keyword: anaerobic,dichloromethane, "Candidatus Formimonas warabiya", strain DCMF

Michael Manefield
contact affiliation	School of Civil & Environmental Engineering and School of Chemical Engineering, University of New South Wales, Sydney, Australia
contact email	manefield@unsw.edu.au
lab head
Sophie Holland
contact affiliation	Heriot-Watt University
contact email	s.holland@hw.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037334

PRIDE project URI

• PRIDE
  1. PXD037334
     1. Label: PRIDE project
     2. Name: Metaproteomic analysis of dichloromethane-fermenting enrichment culture DFE