PXD037196
PXD037196 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Transfer of the high-quality sugar metabolic model of Aspergillus niger is reliable within the same fungal phylum, but limited for fungi of other phyla |
| Description | Proteomic data from fungi; intracellular-proteome of five of the studied fungi (A. niger, A. nidulans, P. subrubescens, T. reesei and P. chrysosporium) grown on nine different monosaccharide conditions (L-arabinose, D-fructose, D-galacturonicAcid, D-galactose, D-glucuronicAcid, D-glucose, D-mannose, L-rhamnose, D-xylose) was analyzed to reveal the fungal response to each specific sugar at the proteome level ; 3 biological replicates. Samples were digested with trypsin, then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS processing pipeline against FASTA files obtained from Mycocosm. |
| HostingRepository | MassIVE |
| AnnounceDate | 2024-02-29 |
| AnnouncementXML | Submission_2024-02-29_14:08:12.449.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Nikola Tolic |
| SpeciesList | scientific name: Aspergillus niger, Aspergillus nidulans, Penicillium subrubescens, Trichoderma reesei, Phanerochaete chrysosporium; |
| ModificationList | unknown modification |
| Instrument | instrument model |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2022-10-05 15:29:40 | ID requested | |
| ⏵ 1 | 2024-02-29 14:08:12 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: proteomics, metabolism network, fungi, Aspergillus niger |
Contact List
| Ronald de Vries | |
|---|---|
| contact affiliation | Westerdijk Fungal Biodiversity Institute |
| contact email | r.devries@wi.knaw.nl |
| lab head | |
| Nikola Tolic | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | Nikola.Tolic@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v05/MSV000090477/ |
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