PXD036989

PXD036989 is an original dataset announced via ProteomeXchange.

Title	jellyfish detritus degrading microbiome
Description	Jellyfish blooms represent a significant, but largely overlooked, source of labile organic matter (jelly-OM) in the ocean, characterized by high protein content with a low C:N ratio. The bloom-decay cycle of jellyfish in coastal waters are important vehicles for carbon export to the ocean’s interior. To accurately incorporate them into biogeochemical models, the interactions between microbes and jelly-OM have yet to be fully characterized. We conducted jelly-OM enrichment experiments to simulate the scenario experienced by the coastal microbiome after the decay of a jellyfish bloom. We combined metagenomics, endo- and exo-metaproteomic approaches to obtain a mechanistic understanding on the metabolic network operated by the jelly-OM degrading bacterial consortium.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:07:41.082.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	ZIhao Zhao
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	carbamoylated residue; monohydroxylated residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2022-09-25 14:56:17	ID requested
1	2023-10-24 11:34:08	announced
⏵ 2	2023-11-14 09:07:42	announced	2023-11-14: Updated project metadata.

Tinta T, Zhao Z, Bayer B, Herndl GJ, Jellyfish detritus supports niche partitioning and metabolic interactions among pelagic marine bacteria. Microbiome, 11(1):156(2023) [pubmed]

submitter keyword: jellyfish, metagenomics, detritus, microbes, exoproteomics, metaproteomics

Zihao Zhao
contact affiliation	University of Vienna
contact email	zihao.zhao@univie.ac.at
lab head
ZIhao Zhao
contact affiliation	University of Vienna
contact email	zihao.zhao@univie.ac.at
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD036989

PRIDE project URI

• PRIDE
  1. PXD036989
     1. Label: PRIDE project
     2. Name: jellyfish detritus degrading microbiome