PXD036554
PXD036554 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Artificial intelligence defines protein-based classification of thyroid nodules |
Description | We applied PCT-DIA on a total of 1161 nodules from 1133 patients using either tissue cores (1 mm diameter; 0.5–1 mm depth) punched from regions of interest marked on retrospective FFPE tissue blocks or prospective cytology specimens from FNA aspirates. The samples comprise (i) a discovery set of FFPE samples from Singapore General Hospital (n = 579 nodules) where histopathological diagnoses were confirmed on central review by a board-certified pathologist; and independent test sets from twelve hospitals in China and Singapore consisting of (ii) retrospective test sets of FFPE samples (n = 288 nodules) with the same histopathological assessment and classification as the discovery sample set, and (iii) a prospective test set of FNA biopsies (n = 294 nodules) which were additionally scored by the Bethesda System for reporting thyroid cytopathology. |
HostingRepository | iProX |
AnnounceDate | 2022-09-07 |
AnnouncementXML | Submission_2022-09-07_23:29:29.329.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Tiannan Guo |
SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2022-09-07 23:28:49 | ID requested | |
⏵ 1 | 2022-09-07 23:29:30 | announced |
Publication List
Sun Y, Selvarajan S, Zang Z, Liu W, Zhu Y, Zhang H, Chen W, Chen H, Li L, Cai X, Gao H, Wu Z, Zhao Y, Chen L, Teng X, Mantoo S, Lim TK, Hariraman B, Yeow S, Alkaff SMF, Lee SS, Ruan G, Zhang Q, Zhu T, Hu Y, Dong Z, Ge W, Xiao Q, Wang W, Wang G, Xiao J, He Y, Wang Z, Sun W, Qin Y, Zhu J, Zheng X, Wang L, Zheng X, Xu K, Shao Y, Zheng S, Liu K, Aebersold R, Guan H, Wu X, Luo D, Tian W, Li SZ, Kon OL, Iyer NG, Guo T, Artificial intelligence defines protein-based classification of thyroid nodules. Cell Discov, 8(1):85(2022) [pubmed] |
Keyword List
submitter keyword: Thyroid, FFPE |
Contact List
Tiannan Guo | |
---|---|
contact affiliation | Westlake University |
contact email | guotiannan@westlake.edu.cn |
lab head | |
Tiannan Guo | |
contact affiliation | Westlake University |
contact email | guotiannan@westlake.edu.cn |
dataset submitter |
Full Dataset Link List
iProX dataset URI |