PXD036252

PXD036252 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Single cell carbon and nitrogen incorporation and remineralization profiles are uncoupled from phylogenetic groupings of diatom-associated bacteria
Description	We quantified bacterial incorporation of algal-derived complex dissolved organic C (DOC) and N (DON) and net algal incorporation of remineralized C and N at the single cell level using isotope tracing and NanoSIMS for fifteen bacterial co-cultures growing with the diatom Phaeodactylum tricornutum, and examined the expressed proteins of two of the isolates when growing with P. tricornutum. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.
HostingRepository	MassIVE
AnnounceDate	2022-08-25
AnnouncementXML	Submission_2022-08-25_09:21:01.191.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Phaeodactylum tricornutum; NCBI TaxID: 2850;
ModificationList	Oxidation
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-08-24 14:43:43	ID requested
⏵ 1	2022-08-25 09:21:01	announced

Publication List

Xavier Mayali, Ty Samo, Jeff Kimbrel, Rhona K. Stuart, Megan Morris, Kristina Rolison, Christina Ramon, Young-Mo Kim, Nathalie Munoz-Munoz, Carrie Nicora, Sam Purvine, Mary Lipton, Peter K. Weber. Single cell carbon and nitrogen incorporation and remineralization profiles are uncoupled from phylogenetic groupings of diatom-associated bacteria. bioRxiv. Epub 2022 Jul 02. doi: https://doi.org/10.1101/2022.07.01.498368.

Xavier Mayali, Ty Samo, Jeff Kimbrel, Rhona K. Stuart, Megan Morris, Kristina Rolison, Christina Ramon, Young-Mo Kim, Nathalie Munoz-Munoz, Carrie Nicora, Sam Purvine, Mary Lipton, Peter K. Weber. Single cell carbon and nitrogen incorporation and remineralization profiles are uncoupled from phylogenetic groupings of diatom-associated bacteria. bioRxiv. Epub 2022 Jul 02. doi: https://doi.org/10.1101/2022.07.01.498368.

Keyword List

submitter keyword: algal-bacterial interactions, stable isotope probing, NanoSIMS, microbial ecology

submitter keyword: algal-bacterial interactions, stable isotope probing, NanoSIMS, microbial ecology

Contact List

Xavier Mayali
contact affiliation	Lawrence Livermore National Laboratory
contact email	mayali1@llnl.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000090201/