PXD035759

PXD035759 is an original dataset announced via ProteomeXchange.

Title	wetland four-member synthetic community
Description	The synthetic microbial community used in this study was composed of the major functional guilds (cellulolytic fermenter, sulfate reducer, hydrogenotrophic methanogen and acetoclastic methanogen) that mediate the anaerobic conversion of cellulosic biomass to CH4 and CO2 in wetland soils. The choice of a facultative sulfate-reducing bacterium (Desulfovibrio vulgaris Hildenborough) introduced metabolic versatility and enabled investigations into the community response to sulfate intrusion. The growth status of these multi-species cultures was measured over a week by daily analysis of substrate consumption and product accumulation. The quad-cultures were analyzed with metaproteomics at the end of experiment to characterize the community structure and metabolic activities.
HostingRepository	PRIDE
AnnounceDate	2023-02-17
AnnouncementXML	Submission_2023-02-17_04:16:50.636.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD035759
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	DongyuWang
SpeciesList	scientific name: Methanospirillum hungatei JF-1; NCBI TaxID: 323259; scientific name: Desulfovibrio vulgaris str. Hildenborough; NCBI TaxID: 882; scientific name: Methanothrix soehngenii GP6; NCBI TaxID: 990316; scientific name: Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10); NCBI TaxID: 394503;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2022-08-02 10:45:56	ID requested
⏵ 1	2023-02-17 04:16:51	announced

10.6019/PXD035759;

submitter keyword: cellulose,wetland, methane, microbes, sulfate intrusion

ChonglePan
contact affiliation	Department of Microbiology and Plant Biology School of Computer Science University of Oklahoma
contact email	cpan@ou.edu
lab head
DongyuWang
contact affiliation	University of Oklahoma
contact email	dywang@ou.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD035759

PRIDE project URI

• PRIDE
  1. PXD035759
     1. Label: PRIDE project
     2. Name: wetland four-member synthetic community