PXD035173

PXD035173 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic profiling of carotid atherosclerotic plaques and adjacent intact arterial segments
Description	Although it is well known that the extracellular matrix composition significantly impacts the development of neointimal hyperplasia and atherosclerosis, the biochemical cues regulating the cell-ECM interactions within the neointima remain obscure. Here, we pairwise collected 14 atherosclerotic plaques excised during the carotid endarterectomy and 14 adjacent intact aortic segments and then interrogated their proteomic profile.
HostingRepository	PRIDE
AnnounceDate	2025-06-05
AnnouncementXML	Submission_2025-06-05_00:33:42.189.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Arseniy Lobov
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; monohydroxylated residue; deaminated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-07-08 01:26:13	ID requested
⏵ 1	2025-06-05 00:33:43	announced

Publication List

Kanonykina A, Velikanova E, Markova V, Bogdanov L, Shishkova D, Shabaev A, Sinitsky M, Sinitskaya A, Poddubnyak A, Lazebnaya A, Stepanov A, Tyurina A, Lobov A, Zainullina B, Yuzhalin A, Kutikhin A, Citrullination Accompanies the Development of Carotid Atherosclerotic Plaques. Curr Med Chem, ():(2024) [pubmed]
10.2174/0109298673327175240929222308;

Kanonykina A, Velikanova E, Markova V, Bogdanov L, Shishkova D, Shabaev A, Sinitsky M, Sinitskaya A, Poddubnyak A, Lazebnaya A, Stepanov A, Tyurina A, Lobov A, Zainullina B, Yuzhalin A, Kutikhin A, Citrullination Accompanies the Development of Carotid Atherosclerotic Plaques. Curr Med Chem, ():(2024) [pubmed]

10.2174/0109298673327175240929222308;

Keyword List

submitter keyword: atherosclerosis, TimsToF Pro, diaPASEF, data-independent acquisition

submitter keyword: atherosclerosis, TimsToF Pro, diaPASEF, data-independent acquisition

Contact List

Anton G. Kutikhin
contact affiliation	Laboratory of Molecular, Translational and Digital Medicine, Research Institute for Complex Issues of Cardiovascular Diseases, Kemerovo, Russia
contact email	antonkutikhin@gmail.com
lab head
Arseniy Lobov
contact affiliation	Yifat Merbl Lab, Dept. of Systems Immunology, Weizmann Institute of Science
contact email	arseniylobov@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD035173
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD035173

PRIDE project URI

Repository Record List

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