PXD034989

PXD034989 is an original dataset announced via ProteomeXchange.

Title	Fish coelomic fluid proteomic analysis by LC-MSMS
Description	The aim of this study was to complete and fully characterize the proteome of rainbow trout coelomic fluid (CF). Furthermore, we intended to identify the proteins responsible for the extension of egg viability in salmonids coelomic fluid. For this, the proteomic composition of different salmonids CF and non-salmonids CF were compared to identify proteins specifically present in salmonids CF. Those proteins could be responsible for the egg conservation property of the salmonids CF. In parallel, rainbow trout CF has been fractionated using HPLC coupled to gel filtration or ion exchange columns. We have then tested the egg conservation properties of the different fractions obtained. Proteins present in the fractions allowing egg quality preservation were identified. Identifying the CF components involved in egg viability would have important applied outputs with various biotechnological applications for aquaculture. It could help understanding egg quality preservation mechanisms, and consequently improving egg storage condition.
HostingRepository	PRIDE
AnnounceDate	2024-05-21
AnnouncementXML	Submission_2024-05-21_12:37:19.840.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD034989
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Aurelie Gueho
SpeciesList	scientific name: Cyprinus carpio (Common carp); NCBI TaxID: 7962; scientific name: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri); NCBI TaxID: 8022; scientific name: Carassius auratus; NCBI TaxID: 7957; scientific name: Sander lucioperca; NCBI TaxID: 283035; scientific name: Salmo salar (Atlantic salmon); NCBI TaxID: 8030; scientific name: Acipenser gueldenstaedtii; NCBI TaxID: 7902; scientific name: Salmo trutta; NCBI TaxID: 8032; scientific name: Acipenser baerii; NCBI TaxID: 27689;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2022-06-30 03:03:05	ID requested
⏵ 1	2024-05-21 12:37:20	announced

10.1038/s41598-024-60118-2;

10.6019/PXD034989;

Gueho A, Ż, arski D, Rime H, Gu, é, vel B, Com E, Lavigne R, Nguyen T, Montfort J, Pineau C, Bobe J, Evolutionarily conserved ovarian fluid proteins are responsible for extending egg viability in salmonid fish. Sci Rep, 14(1):9651(2024) [pubmed]

submitter keyword: LC-MSMS,fish, coelimic fluid

Julien Bobe
contact affiliation	UR1037 – Laboratoire de Physiologie et Génomique des Poissons (LPGP), INRAE, France
contact email	julien.bobe@inrae.fr
lab head
Aurelie Gueho
contact affiliation	Rennes 1
contact email	aurelie.gueho@univ-rennes1.fr
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD034989
     1. Label: PRIDE project
     2. Name: Fish coelomic fluid proteomic analysis by LC-MSMS