PXD034979 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Microbiota biobanking using ice recrystalization inhibitor |
Description | This study use different ice recrystalization inhibitors (IRIs) for better storing live microbiota. We evaluated whether the addition of IRIs can improve the cultivibility of microbiome and maintain their resposnes to prebiotic kestose. Frozen or fresh microbiota were cultured with or without kestose for 24 hours, and microbiota samples were collected for metaproteomics analysis. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:27:33.879.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Xu Zhang |
SpeciesList | scientific name: human feces metagenome; NCBI TaxID: 2705415; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-06-30 02:49:37 | ID requested | |
1 | 2023-02-07 08:51:44 | announced | |
⏵ 2 | 2023-11-14 08:27:34 | announced | 2023-11-14: Updated project metadata. |
Publication List
Creskey M, Li L, Ning Z, Fekete EE, Mayne J, Walker K, Ampaw A, Ben R, Zhang X, Figeys D, An economic and robust TMT labeling approach for high throughput proteomic and metaproteomic analysis. Proteomics, 23(21-22):e2200116(2023) [pubmed] |
Keyword List
submitter keyword: microbiome, biobanking, metaproteomics |
Contact List
Xu Zhang |
contact affiliation | Regulatory research division, BRDD, Health Canada |
contact email | xu.zhang@hc-sc.gc.ca |
lab head | |
Xu Zhang |
contact affiliation | University of Ottawa |
contact email | cheuzhang@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD034979 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD034979
- Label: PRIDE project
- Name: Microbiota biobanking using ice recrystalization inhibitor