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PXD034968

PXD034968 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleiBench Ground Truth Validation Tool
DescriptioniBench is an open-source tool that provides enhanced validation of Mass Spectrometry identification methods. For this project, iBench was applied to Percolator rescored results from Mascot searches from a tryptic digestion of the K562 proteome, HLA-I immunopeptidome experiment, and synthetic peptide libraries. Here we provide the Mascot search results which were benchmarked as well as the original searches used to generate the ground truth identifications. These search results were generated by reprocessing RAW data from the PXD031709, PXD034056 and PXD031812 repositories.
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_08:59:30.084.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMichele Mishto
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-06-29 15:29:32ID requested
12022-11-29 10:06:26announced
22023-11-14 08:59:30announced2023-11-14: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Mascot, proteomics,Mass Spectrometry, Benchmarking
Contact List
Michele Mishto, Juliane Liepe
contact affiliationMichele Mishto, Head of the research group Molecular Immunology at King’s College London and the Francis Crick Institute, London (UK). Email: michele.mishto@kcl.ac.uk, Juliane Liepe, Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). Email: jliepe@mpinat.mpg.de
contact emailjliepe@mpinat.mpg.de
lab head
Michele Mishto
contact affiliationKing's College London
contact emailmichele.mishto@kcl.ac.uk
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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