PXD034932 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Data for demonstrating new features in compareMS2 2.0 |
Description | This submission contains datasets from several species used to demonstrate new features in compareMS2 2.0. Tandem mass spectrometry data from California sea lion, chimpanzee, dog, human, rock hyrax, and white-tailed deer sera were graciously provided with permission from an ongoing collaboration with Dr. Michael G. Janech (College of Charleston) as part of the CoMPARe Program (Comparative Mammalian Proteome Aggregator Resource). Specifically, the California sea lion sera were provided by The Marine Mammal Center (Sausalito, CA), the chimpanzee, rock hyrax, and white-tailed deer sera were provided by The Chattanooga Zoo, and the dog serum from Gus (Ohlandt Veterinary Clinic, Charleston, SC). In addition to institutional and NMFS permits and approval, data collection was performed under NIST ACUC MML-AR20-0001. The identification of certain commercial equipment, instruments, software, or materials does not imply recommendation or endorsement by the National Institute of Standards and Technology, nor does it imply that the products identified are necessarily the best available for the purpose. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:25:42.816.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD034932 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Magnus Palmblad |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Pan troglodytes (Chimpanzee); NCBI TaxID: 9598; scientific name: Canis lupus familiaris; NCBI TaxID: NCBITaxon:9615; scientific name: Procavia capensis; NCBI TaxID: 9813; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Odocoileus virginianus; NCBI TaxID: NCBITaxon:9874; scientific name: Zalophus californianus; NCBI TaxID: NCBITaxon:9704; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion Lumos; amaZon ETD |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-06-27 01:59:07 | ID requested | |
1 | 2022-10-06 01:18:57 | announced | |
⏵ 2 | 2023-11-14 08:25:43 | announced | 2023-11-14: Updated project metadata. |
Publication List
Marissen R, Varunjikar MS, Laros JFJ, Rasinger JD, Neely BA, Palmblad M, compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets. J Proteome Res, 22(2):514-519(2023) [pubmed] |
10.6019/PXD034932; |
Keyword List
submitter keyword: serum,molecular phylogenetics |
Contact List
Magnus Palmblad |
contact affiliation | Leiden University Medical Center |
contact email | n.m.palmblad@lumc.nl |
lab head | |
Magnus Palmblad |
contact affiliation | Center for Proteomics and Metabolomics |
contact email | n.m.palmblad@lumc.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD034932
- Label: PRIDE project
- Name: Data for demonstrating new features in compareMS2 2.0