<<< Full experiment listing

PXD034932

PXD034932 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleData for demonstrating new features in compareMS2 2.0
DescriptionThis submission contains datasets from several species used to demonstrate new features in compareMS2 2.0. Tandem mass spectrometry data from California sea lion, chimpanzee, dog, human, rock hyrax, and white-tailed deer sera were graciously provided with permission from an ongoing collaboration with Dr. Michael G. Janech (College of Charleston) as part of the CoMPARe Program (Comparative Mammalian Proteome Aggregator Resource). Specifically, the California sea lion sera were provided by The Marine Mammal Center (Sausalito, CA), the chimpanzee, rock hyrax, and white-tailed deer sera were provided by The Chattanooga Zoo, and the dog serum from Gus (Ohlandt Veterinary Clinic, Charleston, SC). In addition to institutional and NMFS permits and approval, data collection was performed under NIST ACUC MML-AR20-0001. The identification of certain commercial equipment, instruments, software, or materials does not imply recommendation or endorsement by the National Institute of Standards and Technology, nor does it imply that the products identified are necessarily the best available for the purpose.
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_08:25:42.816.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD034932
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterMagnus Palmblad
SpeciesList scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Pan troglodytes (Chimpanzee); NCBI TaxID: 9598; scientific name: Canis lupus familiaris; NCBI TaxID: NCBITaxon:9615; scientific name: Procavia capensis; NCBI TaxID: 9813; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Odocoileus virginianus; NCBI TaxID: NCBITaxon:9874; scientific name: Zalophus californianus; NCBI TaxID: NCBITaxon:9704;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Fusion Lumos; amaZon ETD
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-06-27 01:59:07ID requested
12022-10-06 01:18:57announced
22023-11-14 08:25:43announced2023-11-14: Updated project metadata.
Publication List
Marissen R, Varunjikar MS, Laros JFJ, Rasinger JD, Neely BA, Palmblad M, compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets. J Proteome Res, 22(2):514-519(2023) [pubmed]
10.6019/PXD034932;
Keyword List
submitter keyword: serum,molecular phylogenetics
Contact List
Magnus Palmblad
contact affiliationLeiden University Medical Center
contact emailn.m.palmblad@lumc.nl
lab head
Magnus Palmblad
contact affiliationCenter for Proteomics and Metabolomics
contact emailn.m.palmblad@lumc.nl
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD034932
PRIDE project URI
Repository Record List
[ + ]