PXD034902

PXD034902 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic analysis of Dscc1 knockout mouse cells
Description	In this project we aimed to explore the effect of Dscc1 gene loss on the proteome. Embyros from wildtype and aged matched Dssc1 null embryos were profiled.
HostingRepository	PRIDE
AnnounceDate	2024-03-18
AnnouncementXML	Submission_2024-03-18_07:27:46.554.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	James Wright
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-06-26 07:31:37	ID requested
1	2023-11-17 03:12:48	announced
⏵ 2	2024-03-18 07:27:47	announced	2024-03-18: Updated project metadata.

Publication List

10.1038/s41586-023-07009-0;
Adams DJ, Barlas B, McIntyre RE, Salguero I, van der Weyden L, Barros A, Vicente JR, Karimpour N, Haider A, Ranzani M, Turner G, Thompson NA, Harle V, Olvera-Le, ó, n R, Robles-Espinoza CD, Speak AO, Geisler N, Weninger WJ, Geyer SH, Hewinson J, Karp NA, Fu B, Yang F, Kozik Z, Choudhary J, Yu L, van Ruiten MS, Rowland BD, Lelliott CJ, Del Castillo Velasco-Herrera M, Verstraten R, Bruckner L, Henssen AG, Rooimans MA, de Lange J, Mohun TJ, Arends MJ, Kentistou KA, Coelho PA, Zhao Y, Zecchini H, Perry JRB, Jackson SP, Balmus G, Tudor CL, Green AL, Mazzeo CI, Siragher E, Lillistone C, Gleeson D, Sethi D, Bayzetinova T, Burvill J, Habib B, Weavers L, Maswood R, Miklejewska E, Woods M, Grau E, Newman S, Sinclair C, Brown E, Doe B, Galli A, Ramirez-Solis R, Ryder E, Steel K, Bradley A, Skarnes WC, Adams DJ, Lafont D, Vancollie VE, McLaren RSB, Hughes-Hallett L, Rowley C, Sanderson E, Tuck E, Dabrowska M, Griffiths M, Gannon D, Cockle N, Kirton A, Bottomley J, Ingle C, Lelliott C, White JK, Genetic determinants of micronucleus formation in vivo. Nature, 627(8002):130-136(2024) [pubmed]

10.1038/s41586-023-07009-0;

Adams DJ, Barlas B, McIntyre RE, Salguero I, van der Weyden L, Barros A, Vicente JR, Karimpour N, Haider A, Ranzani M, Turner G, Thompson NA, Harle V, Olvera-Le, ó, n R, Robles-Espinoza CD, Speak AO, Geisler N, Weninger WJ, Geyer SH, Hewinson J, Karp NA, Fu B, Yang F, Kozik Z, Choudhary J, Yu L, van Ruiten MS, Rowland BD, Lelliott CJ, Del Castillo Velasco-Herrera M, Verstraten R, Bruckner L, Henssen AG, Rooimans MA, de Lange J, Mohun TJ, Arends MJ, Kentistou KA, Coelho PA, Zhao Y, Zecchini H, Perry JRB, Jackson SP, Balmus G, Tudor CL, Green AL, Mazzeo CI, Siragher E, Lillistone C, Gleeson D, Sethi D, Bayzetinova T, Burvill J, Habib B, Weavers L, Maswood R, Miklejewska E, Woods M, Grau E, Newman S, Sinclair C, Brown E, Doe B, Galli A, Ramirez-Solis R, Ryder E, Steel K, Bradley A, Skarnes WC, Adams DJ, Lafont D, Vancollie VE, McLaren RSB, Hughes-Hallett L, Rowley C, Sanderson E, Tuck E, Dabrowska M, Griffiths M, Gannon D, Cockle N, Kirton A, Bottomley J, Ingle C, Lelliott C, White JK, Genetic determinants of micronucleus formation in vivo. Nature, 627(8002):130-136(2024) [pubmed]

Keyword List

submitter keyword: Knock out, MS/MS, DSCC1,Mouse

submitter keyword: Knock out, MS/MS, DSCC1,Mouse

Contact List

Jyoti Choudhary
contact affiliation	The Insitute of Cancer Research
contact email	jyoti.choudhary@icr.ac.uk
lab head
James Wright
contact affiliation	The Institute of Cancer Research
contact email	james.wright@icr.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034902
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD034902

PRIDE project URI

Repository Record List

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