PXD034815

PXD034815 is an original dataset announced via ProteomeXchange.

Title	Accurate Taxonomic Annotation from Metagenomic Data for Deep Metaproteomic Coverage of Microbiota
Description	We developed an accurate taxonomic annotation strategy from metagenomic data for deep metaproteomic coverage, and also compared the performance of the state-of-the-art LC-MS/MS techniques using a simulated microbial community with 12 species. In addition, we also achieved deep proteome coverage of human gut microbiome from stool samples.
HostingRepository	iProX
AnnounceDate	2022-06-21
AnnouncementXML	Submission_2025-02-07_18:33:57.355.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Enhui Wu
SpeciesList	scientific name: Pseudomonas aeruginosa; NCBI TaxID: 287; scientific name: Klebsiella pneumoniae; NCBI TaxID: 573; scientific name: Morganella morganii; NCBI TaxID: 582; scientific name: Citrobacter freundii complex; NCBI TaxID: 1344959; scientific name: Enterococcus faecalis; NCBI TaxID: 1351; scientific name: Klebsiella aerogenes; NCBI TaxID: 548; scientific name: Bacteroides fragilis; NCBI TaxID: 817; scientific name: Enterobacter asburiae; NCBI TaxID: 61645; scientific name: Enterococcus casseliflavus; NCBI TaxID: 37734; scientific name: Escherichia coli ATCC 25922; NCBI TaxID: 1322345; scientific name: Clostridium butyricum; NCBI TaxID: 1492; scientific name: Lactobacillus acidophilus; NCBI TaxID: 1579; scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos; timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2022-06-22 00:38:10	ID requested
⏵ 1	2025-02-07 18:33:58	announced

Wu E, Mallawaarachchi V, Zhao J, Yang Y, Liu H, Wang X, Shen C, Lin Y, Qiao L, Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics. Microbiome, 12(1):58(2024) [pubmed]

submitter keyword: Metaproteomics, Database optimization, Taxonomic annotation

Liang Qiao
contact affiliation	Department of Chemistry, Fudan University
contact email	liang_qiao@fudan.edu.cn
lab head
Enhui Wu
contact affiliation	Department of Chemistry, Fudan University
contact email	20110220037@fudan.edu.cn
dataset submitter

iProX dataset URI