PXD034805

PXD034805 is an original dataset announced via ProteomeXchange.

Title	A mass spectrometry-based approach for the identification of Kpnβ1 binding partners in cancer cells
Description	Karyopherin beta 1 (Kpnβ1) is the principal nuclear importer of cargo proteins and plays a role in many cellular processes. Its expression is upregulated in cancer and essential for cancer cell viability, thus the identification of its binding partners might help in the discovery of anti-cancer therapeutic targets and cancer biomarkers. Herein, we applied immunoprecipitation coupled to mass spectrometry (IP- MS) to identify Kpnβ1 binding partners in normal and cancer cells. IP-MS identified 100 potential Kpnβ1 binding partners in non-cancer hTERT-RPE1, 179 in HeLa cervical cancer, 147 in WHCO5 oesophageal cancer and 176 in KYSE30 oesophageal cancer cells, including expected and novel interaction partners. 38 binding proteins were identified in all cell lines, with the majority involved in RNA metabolism. 18 binding proteins were unique to the cancer cells, with many involved in protein translation. Western blot analysis validated the interaction of known and novel binding partners with Kpnβ1 and revealed enriched interactions between Kpnβ1 and select proteins in cancer cells, including proteins involved in cancer development, such as Kpnα2, Ran, Crm1, CCAR1 and FUBP1. Together, this study shows that Kpnβ1 interacts with numerous proteins, and its enhanced interaction with certain proteins in cancer cells likely contributes to the cancer state.
HostingRepository	PRIDE
AnnounceDate	2022-11-03
AnnouncementXML	Submission_2022-11-03_02:26:01.001.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	ShaunGarnett
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	carbamoylated residue; acetylated residue; monohydroxylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2022-06-21 15:05:58	ID requested
⏵ 1	2022-11-03 02:26:01	announced

Dataset with its publication pending

submitter keyword: Cancer,KPNB1

Virna DLeaner
contact affiliation	SAMRC Gynaecology Cancer Research Centre, University of Cape Town, South Africa
contact email	virna.leaner@uct.ac.za
lab head
ShaunGarnett
contact affiliation	University of Cape Town
contact email	shaungarnett@gmail.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD034805
     1. Label: PRIDE project
     2. Name: A mass spectrometry-based approach for the identification of Kpnβ1 binding partners in cancer cells