PXD034782

PXD034782 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	LC-MS/MS Proteomics analysis of LncRNA SNHG6 in HEPG2 cell line
Description	To identify the proteins interact with LncRNA SNHG6 in human cell lines, we analyzed the protein using RNA-Pulldown followed by mass spectrometry in HEPG2. We identified proteins associated with the SNHG6 sense/anti-sense in the isolated complexes using MS and searched the human databases for these proteins.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:01:34.175.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Aifu Lin
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-06-21 05:01:38	ID requested
1	2022-10-14 05:34:27	announced
⏵ 2	2023-11-14 08:01:35	announced	2023-11-14: Updated project metadata.

Publication List

Liu F, Tian T, Zhang Z, Xie S, Yang J, Zhu L, Wang W, Shi C, Sang L, Guo K, Yang Z, Qu L, Liu X, Liu J, Yan Q, Ju HQ, Wang W, Piao HL, Shao J, Zhou T, Lin A, Long non-coding RNA SNHG6 couples cholesterol sensing with mTORC1 activation in hepatocellular carcinoma. Nat Metab, 4(8):1022-1040(2022) [pubmed]

Liu F, Tian T, Zhang Z, Xie S, Yang J, Zhu L, Wang W, Shi C, Sang L, Guo K, Yang Z, Qu L, Liu X, Liu J, Yan Q, Ju HQ, Wang W, Piao HL, Shao J, Zhou T, Lin A, Long non-coding RNA SNHG6 couples cholesterol sensing with mTORC1 activation in hepatocellular carcinoma. Nat Metab, 4(8):1022-1040(2022) [pubmed]

Keyword List

submitter keyword: LncRNA,SNHG6

submitter keyword: LncRNA,SNHG6

Contact List

Aifu Lin
contact affiliation	MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University; Hangzhou, Zhejiang, 310058, China
contact email	linaifu@zju.edu.cn
lab head
Aifu Lin
contact affiliation	MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University; Hangzhou, Zhejiang
contact email	linaifu@zju.edu.cn
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD034782
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD034782

PRIDE project URI

Repository Record List

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