PXD034429

PXD034429 is an original dataset announced via ProteomeXchange.

Title	DDA acquisition of the immunopeptidomes of C1R-B*57:01 and C1R-A*02:01 cell lines
Description	Immunopeptidomes are the peptide repertoires bound by the molecules encoded by the major histocompatibility complex (MHC) (human leukocyte antigen (HLA) in humans). These HLA-peptide complexes are presented on the cell surface for immune T cell recognition. Immunopeptidomics utilizes tandem mass spectrometry (MS/MS) to identify and quantify peptides bound to HLA molecules. The dataset deposited here contains the DDA runs used to generate the spectral libraries of the HLA-bound peptides purified and isolated from C1R-B*57:01 and C1R-A*02:01 cell lines.
HostingRepository	PRIDE
AnnounceDate	2023-02-13
AnnouncementXML	Submission_2023-02-13_03:11:37.072.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	MohammadShahbazy
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; deamidated residue
Instrument	Q Exactive; Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2022-06-09 14:17:45	ID requested
⏵ 1	2023-02-13 03:11:37	announced

Dataset with its publication pending

submitter keyword: Mass spectrometry

Immunopeptidomics

HLA-bound peptides

DDA

Spectral library

Anthony W.Purcell
contact affiliation	Department of Biochemistry and Molecular Biology and the Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia
contact email	anthony.purcell@monash.edu
lab head
MohammadShahbazy
contact affiliation	Biomedicine Discovery Institute and Department of Biochemistry & Molecular Biology, Monash University, Clayton, VIC 3800, Australia
contact email	mohammad.shahbazy@monash.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD034429

PRIDE project URI

• PRIDE
  1. PXD034429
     1. Label: PRIDE project
     2. Name: DDA acquisition of the immunopeptidomes of C1R-B*57:01 and C1R-A*02:01 cell lines