PXD034159

PXD034159 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	RNA pulldown-MS, Dlg4 RNA in mouse brain
Description	Goal was to identify RNA-binding proteins with a preference for m6A-modified RNA using an RNA bait generated from a known m6A site in the Dlg4 (PSD-95) mRNA 3`-UTR. By comparison of differential enrichment between m6A-RNA pulldown fractions and A-RNA or no RNA fractions, we can identify m6A-binding proteins.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_07:05:58.745.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD034159
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Kate Meyer
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-05-27 06:32:37	ID requested
1	2022-10-13 02:45:13	announced
⏵ 2	2023-11-14 07:05:59	announced	2023-11-14: Updated project metadata.

Publication List

Choi SH, Flamand MN, Liu B, Zhu H, Hu M, Wang M, Sewell J, Holley CL, Al-Hashimi HM, Meyer KD, A-binding protein that affects neuronal differentiation and the splicing of a subset of mRNAs. Cell Rep, 40(9):111293(2022) [pubmed]
10.6019/PXD034159;

Choi SH, Flamand MN, Liu B, Zhu H, Hu M, Wang M, Sewell J, Holley CL, Al-Hashimi HM, Meyer KD, A-binding protein that affects neuronal differentiation and the splicing of a subset of mRNAs. Cell Rep, 40(9):111293(2022) [pubmed]

10.6019/PXD034159;

Keyword List

submitter keyword: pulldown,m6A, RNA, LC-MS/MS

submitter keyword: pulldown,m6A, RNA, LC-MS/MS

Contact List

Kate Meyer
contact affiliation	Assistant Professor of Biochemistry Assistant Professor of Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710
contact email	kate.meyer@duke.edu
lab head
Kate Meyer
contact affiliation	Meyer Laboratory, Department of Biochemistry Duke University, School of Medicine
contact email	kate.meyer@duke.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD034159
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD034159

PRIDE project URI

Repository Record List

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