PXD034056

PXD034056 is an original dataset announced via ProteomeXchange.

Title	inSPIRE Spectral Rescoring Tool
Description	inSPIRE is an open-source tool for spectral rescoring of mass spectrometry search results. For this project, inSPIRE was applied to MaxQuant, PEAKS DB, and Mascot search results from a tryptic digestion of the K562 proteome. Here we provide the RAW files and search results using MaxQuant, PEAKS DB, and Mascot. We also reprocessed RAW data from the PXD031709 and PXD031812 repositories for which we provide the search result files. Additionally, we provide PEAKS search results from RAW files from the PXD015489 repository which was used as training data for a predictor used within inSPIRE. Michele Mishto, Head of the research group Molecular Immunology at King’s College London and the Francis Crick Institute, London (UK). Email: michele.mishto@kcl.ac.uk,
HostingRepository	PRIDE
AnnounceDate	2022-10-26
AnnouncementXML	Submission_2022-10-26_03:50:55.319.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	MicheleMishto
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2022-05-25 01:11:03	ID requested
⏵ 1	2022-10-26 03:50:55	announced

Dataset with its publication pending

submitter keyword: Rescoring,Mass Spectrometry

JulianeLiepe
contact affiliation	Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany
contact email	jliepe@mpinat.mpg.de
lab head
MicheleMishto
contact affiliation	King's College London
contact email	michele.mishto@kcl.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD034056

PRIDE project URI

• PRIDE
  1. PXD034056
     1. Label: PRIDE project
     2. Name: inSPIRE Spectral Rescoring Tool