PXD033811

PXD033811 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	GT-stabiligase N-terminomics technology for capturing proteolytic modifications on human cell surfaces
Description	Here we introduce a stabiligase technology that directly identifies neo-proteolytic epitopeson the cell surface of human cells using a glycan-tethered, engineered peptide ligase.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:50:36.291.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Kaitlin Schaefer
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	6x(13)C labeled residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-05-11 06:01:43	ID requested
1	2023-06-23 15:27:34	announced
2	2023-11-14 09:01:33	announced	2023-11-14: Updated project metadata.
⏵ 3	2024-10-22 05:50:37	announced	2024-10-22: Updated project metadata.

Publication List

Schaefer K, Lui I, Byrnes JR, Kang E, Zhou J, Weeks AM, Wells JA, Direct Identification of Proteolytic Cleavages on Living Cells Using a Glycan-Tethered Peptide Ligase. ACS Cent Sci, 8(10):1447-1456(2022) [pubmed]
10.1021/acscentsci.2c00899;

Schaefer K, Lui I, Byrnes JR, Kang E, Zhou J, Weeks AM, Wells JA, Direct Identification of Proteolytic Cleavages on Living Cells Using a Glycan-Tethered Peptide Ligase. ACS Cent Sci, 8(10):1447-1456(2022) [pubmed]

10.1021/acscentsci.2c00899;

Keyword List

ProteomeXchange project tag: Human Proteome Project
submitter keyword: subtiligase protein engineering,N-terminomics, proteolysis

ProteomeXchange project tag: Human Proteome Project

submitter keyword: subtiligase protein engineering,N-terminomics, proteolysis

Contact List

Kaitlin Schaefer
contact affiliation	Department of Pharmacology, Dr. James Wells Laboratory, University of California,San Francisco
contact email	kaitlin.schaefer@ucsf.edu
lab head
Kaitlin Schaefer
contact affiliation	University of California, San Francisco
contact email	kaitlin.schaefer@ucsf.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD033811
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD033811

PRIDE project URI

Repository Record List

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